Paracoccus albus: PAF20_13105
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Entry
PAF20_13105 CDS
T09266
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pals
Paracoccus albus
Pathway
pals03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PAF20_13105 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pals03400
]
PAF20_13105 (ligD)
Enzymes [BR:
pals01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PAF20_13105 (ligD)
DNA repair and recombination proteins [BR:
pals03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PAF20_13105 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WBU59682
LinkDB
All DBs
Position
2594141..2596600
Genome browser
AA seq
819 aa
AA seq
DB search
MAKSPDPLADYNAKRDFSRTKEPRGQVGEDRKKRRFLVQKHAASRLHYDFRLEWNGVLLS
WAVTKGPSPDPGEKRLAVRTEDHPLDYGDFEGTIPKGEYGGGTVMLWDTGSWVPQQDFEK
GLSDGKLKFTLQGQRMKGGWALVRMRGKSGEKRENWLLIKERDDYAGDDPDGFTSGDAVS
VKTGRTMTQIAEDAPAKAPPDPAPDRSRKRPAFVKPQLATLVSDAPEGDDWLHETKFDGY
RCLAALGTGGTRLYTRSGKDWTDRFHALDGAFDSLPCDAALIDGEVMAARINGSAFSSLQ
KALKQGNALVFFAFDLLRIDGEDLRKLPQIERRERLAKLLSGAPSGGPLRLSEHIVGKGP
EVFANACKAGAEGIISKRIDAPYRSTRSKAWRKVKCTRRQEFVIVGYSPSDKAGRPFASL
LLASHEGGALRYKGRVGTGFSDAVMEAVAREMTARKNPPCHDVPDDIAREAQWVRADLVA
EVEFTEFTGDGYVRHASFLGLRDDKKADDVRLEAPMTDDTETTVQGIRISNADRPVFPDA
GCTKGNVARHYAQVGERMIALAGHRPLSLYRCPSGISDPCFFQKHDVGGMPGELSRVSIE
ESDGDSADYLYATRTESLIAAAQMGSIEFHIWGARTDRLERPDRLVFDLDPDEGLGWTDV
QEAAFDVRDMLASLGLQSGAIVTGGKGVHVWLALRRTRGWDSVKLFAKTFAHVMAARAPD
RYTATMSKSKRRGRVFIDWLRNERGATAIAPYSLRARPGAPVAVPVTWDELKDLEGANSF
SMADMAARLEADCPAAQVQDSLQSLSDGVIDALQAFAEN
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatcccccgaccctctggccgactacaacgccaagcgggacttttcccgcacc
aaggagccacgcggccaagtgggcgaggatcgcaaaaaacgccgctttctggtgcaaaaa
catgccgcgtcgcggctgcattatgatttccggctggaatggaacggcgtgctgctcagc
tgggcggtcacgaaggggccatcgcccgatccgggcgagaaacgtctggccgtgcggacc
gaggatcatccgctcgactacggcgatttcgagggcacgatcccaaagggcgaatacggc
ggcggcacggtcatgctatgggacaccgggagctgggtgccgcagcaagatttcgagaag
ggcctgagcgacggcaagcttaaattcaccctgcaagggcagcggatgaagggcggctgg
gcgctggtgcggatgcgcggaaaatcaggcgagaaacgcgaaaactggctgttgatcaag
gagcgtgacgattacgctggtgacgaccccgacggatttacaagcggcgatgcggtttcg
gtcaagacggggcgcaccatgacgcagatcgccgaggatgcgcctgccaaagccccgcca
gatcctgccccggaccgcagccgcaagcgccccgcgttcgtcaaaccgcagcttgcgacg
ctggtatcagacgcgcccgagggcgatgactggctgcacgagaccaagttcgacggctat
cgctgccttgccgcgctcggcacaggcggcactcggctttatacaaggtcaggcaaggat
tggaccgacaggtttcacgcgctagatggtgcattcgattcgctgccctgcgacgcggcc
ctgatcgacggcgaggtgatggcggcacgaatcaacggctcggcattttcttcgctgcaa
aaggcgttgaaacagggcaacgcgctggtcttctttgccttcgacctcttgcgcatcgac
ggcgaggatctgcgcaagctgcctcagatcgaacgccgcgaacgtctggcaaagttgctg
tcgggtgcgccctccggcggccccctgcggctgagcgaacatatcgtcggcaagggtcca
gaggtgttcgccaatgcctgcaaggcgggtgcggaggggatcatcagcaaacgcattgac
gccccctatcgaagcacccgcagcaaggcgtggcgcaaggtcaaatgcacccgccgacag
gaattcgtgatcgtgggttattcgccgtccgacaaggccgggcggccctttgcctcgctt
cttctggccagccacgagggtggcgcgctgcgctacaagggcagggtcggcaccgggttt
tccgacgctgtgatggaggccgtggcccgggagatgaccgcgcgcaagaatccgccctgc
cacgatgtcccggatgacatcgcgcgggaggcgcagtgggtgcgcgccgatctggtggcc
gaggtcgagttcaccgaattcaccggcgacggctatgtgcgtcatgccagcttcctcggc
ctgcgcgacgacaagaaagccgacgacgtgcgactagaggcaccgatgaccgacgatacc
gaaaccaccgttcagggcatccgcatcagcaatgcggaccgccccgtgttccccgacgca
ggctgcaccaagggcaacgtggcgcggcattacgcgcaggtcggcgaacgcatgatcgcg
ctcgccggacaccgtcccctgtcgctctatcgctgcccgtccggcatttccgatccgtgc
ttcttccagaaacacgatgtcggcgggatgcccggtgaactgtcgcgcgtcagcatcgag
gaaagcgacggcgacagcgccgattacctctatgccacgcggaccgaaagcctgatcgcc
gccgcgcagatgggcagcatcgagttccacatctggggtgcgcggaccgaccggctggaa
cgtcccgatcggctggtgttcgatctcgatcccgacgaggggctgggttggaccgatgtg
caggaggcggccttcgatgtgcgcgatatgctggcaagtctgggtttgcaaagcggcgcc
atcgtcaccggcggcaagggcgtgcatgtctggctggcactgcggcgcacccgcggctgg
gacagtgttaaactgttcgccaagaccttcgcgcatgtgatggcggcgcgcgcgcccgac
cgttacaccgccaccatgtcgaaatcgaaacgccgggggcgcgtcttcatcgactggctg
cgcaacgaacgcggcgcgacggcaatcgccccctattccctgcgcgcccgccccggcgcc
cccgtggccgtgccggtgacatgggacgaattgaaggacctggagggggctaacagcttc
tcgatggctgatatggccgcgcggctggaggcggattgcccggcggcgcaggtccaggac
agcttgcagagcctgagcgatggcgtgatcgacgcgcttcaggcttttgcagagaattga
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