Pseudoglutamicibacter albus: CJ193_002750
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Entry
CJ193_002750 CDS
T09091
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
palu
Pseudoglutamicibacter albus
Pathway
palu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJ193_002750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palu03400
]
CJ193_002750 (mfd)
Enzymes [BR:
palu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJ193_002750 (mfd)
DNA repair and recombination proteins [BR:
palu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJ193_002750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
WIK84782
LinkDB
All DBs
Position
complement(604887..608483)
Genome browser
AA seq
1198 aa
AA seq
DB search
MSLNGLLTALAKDPAFERIRVSAERGPDAADEKEIAAPDGLRPPLVAQIAQSLPQPAGGA
GDAARAVTVVVTPTGRAAGDLVDALGSYLPEGSVEEFPAWETLPHERLSPKSDTVGRRLN
VLRRLHVRDEALKVVVMPVRSLIQPIVDGLGALEPVELVRGSELDFDGVVASLAAAAYSR
VDMVANRGEFAVRGGIIDVFPPTQEHPVRVDFFGDEIEEITYFSVADQRSLLGEDAALER
VECPPCREMLVDEGVRERARRLADSMPGARDMLEKIAAGLSVEGMESLAPLLAEKMVPLS
SVFGPGSVVIVADPERVSGRAADLLATNAEFLEASWSSAAMGADAPVDISQVTGGMEHDA
EAAGFQTLGQARAGVLDAGLAWWTMTALGSDEELVQEGLTVRIPAREPAAWRGDVAQMLD
YVGGRVRDDWSVVVVTDGAGPANRLVELFSDADIPVSRVESIDEAPRPGLIQVTQALAGN
GFVLDDLKLAFLTEADVLGRASSAVARSTKKLASRRRNAVDPLTLEEGDYVVHDQHGIGR
FIQMQQRKTAGAVREYLVIEYAPSKRGAPGDRLFVPTDQLDQITRYVGGDQPTLSKMGGS
DWSQTKSKARRAVREIAGELVKLYSARMASRGHAFAPDTPWQAELEAAFPFVETPDQLTT
IDEVKKDMESEVPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLARQHFET
FTERFAGFPVVVRALSRFQTAKESKETLDGLADGSVDVVIGTHRLLSKQVAFKDLGLIIV
DEEQRFGVEHKEQLKKLRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLT
YVGPYTDKQVVAAIRRELMREGQVFYVHNRVSSIDKVAGQLAELVPEARIAVAHGRMSES
RLEQIMVDFWEGRYDVLVSTTIIETGLDIANANTLIVDRANNYGLSQLHQLRGRVGRGRD
RAYAYFLWDPERPLGEVALERLKAVAAHNELGSGHQLAMKDLELRGAGNLLGGEQSGHIQ
GVGFDLYIRLVGEAVAAFKGDTESTSQEMKIELPLNAHFPEDYVPSERLRLEAYRKLAQA
AEPEAVDAVVEELKDRYGDLPEAAQLLVSVARVRIVARSVNINEIQAQGNYIRFAPDNLA
ESRVMRMKRLYPGAMHKPALKAVLAPFPKGKGLGAQRLADQELLDWVETFLTNVFGES
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgaacggtctgctcaccgcgttggcgaaggaccctgcttttgagcggatccgg
gtttctgctgagcgtgggccggacgctgcggacgagaaggagatcgcggcacctgatggc
ttgcggccgccgctggtcgcgcagatcgctcagtccctgccacagccggctggcggtgcg
ggcgatgctgcgcgcgcggtgactgtggtggtgacgccgacgggccgcgcggccggggac
ttggtcgatgcgctgggtagttatctgcctgagggttcggttgaggagttccctgcgtgg
gagacgttgccgcatgagcggttgtccccgaagtcggacacggtgggccgccggttgaac
gtgctgcggcgtctgcatgtgcgcgatgaggcgctcaaggttgttgtgatgccggtgcgt
tcgttgatccagccgatcgttgatggcctgggcgcgttggaacccgttgagctggtgcgt
ggctctgagctggatttcgatggcgtggttgcttcgctcgcggctgccgcgtattcgcgt
gtggacatggtcgctaaccgcggtgagttcgcggtgcgtggcgggattattgacgtgttc
ccgccgactcaagagcatccggtgcgtgtcgatttctttggtgatgagatcgaggagatc
acgtatttctctgtcgctgatcagcgttctctgttgggcgaggacgcggcgttggagcgg
gtcgaatgccctccgtgccgcgagatgttggtggatgagggtgtgcgtgagcgtgcgcgc
cggctcgcggattcgatgcctggcgctcgcgacatgctcgagaagatcgcggctggtctg
agtgttgagggcatggagtcgttggctcctttgcttgcggagaagatggttccgctgtct
tccgtgtttggcccggggtctgttgtgatcgtcgctgatccggagcgcgtttccggccgc
gccgctgatttgctcgctacgaacgccgaatttttggaggcctcgtggtcttctgcggcg
atgggtgcggatgcgccggttgatatttcgcaggtcacgggcggcatggagcacgatgct
gaggcggctggtttccagacgttaggtcaggctcgcgctggggttctggatgctggcttg
gcgtggtggacgatgaccgcgttgggttcggatgaagaactcgtgcaggaggggttgacg
gtccggattccggcgcgggagcctgccgcgtggcgtggcgatgtcgctcagatgctcgac
tatgtgggtggccgcgtccgggatgactggtcagttgttgtggtcacggatggcgctggc
ccggcgaaccgtttggttgagcttttctctgatgcggacatcccggtgagccgtgttgag
tcgatcgacgaggcgccgcggcctggcctgatccaggtgacgcaggcgctcgccggcaac
ggcttcgttctggatgatctgaagcttgcgttcctcacggaagcggatgtgttgggccgc
gcgagctcggctgtggcgcggtccacgaagaagctggcttcgcgtcgtcggaatgctgtt
gacccgctgaccctggaggaaggcgactatgttgtgcatgatcagcacggcatcgggcgt
ttcatccagatgcagcaacggaagaccgcgggtgcggtgcgcgagtatttggtgatcgaa
tacgcgccgtccaagcgtggcgcgccgggggaccggttgtttgttccgacagatcagctg
gatcagatcacgcggtatgtgggtggggatcagccgacgctgtccaagatgggcggctcg
gattggtcgcagaccaagtcgaaggcgcgccgggcggtccgggagatcgcgggcgaactg
gtcaagctgtattcggcgcggatggcctcccgcgggcacgcgttcgctccggatactccg
tggcaggccgagcttgaggcggcgttcccgtttgttgagaccccggatcagctgaccact
atcgatgaggtcaagaaggatatggagtccgaggtcccgatggaccgcttgatttccggc
gacgtgggcttcggtaagactgaggttgccgtgcgtgccgcgtttaaggcggttcaggac
ggcaagcaggttgcggttttggtccctacgaccctgcttgcacggcagcactttgagacg
ttcacggagcgtttcgcgggtttcccggtggttgtgcgggcgctttcgcgtttccagacg
gcgaaggaatcgaaagagaccctcgatgggctcgccgacggttcggttgatgtggtgatc
ggtacgcaccggttgctttccaagcaggttgctttcaaggacctgggtctcatcatcgtg
gatgaggaacagcgtttcggtgttgagcacaaggagcagctcaagaagctgcgcaccaat
gtggatgtcttagcgatgtccgcgaccccgattccgcgcacacttgagatgtcgctgacg
gggatccgcgagacctcaacgttggcgaccccgccggaggaacgccacccggttttgacg
tatgtgggcccgtacacggacaagcaggtggttgcggcgatccgccgcgagctgatgcgt
gagggccaggttttctatgtccacaaccgggtgtcctcgatcgataaggttgcggggcag
ctcgctgagctggtgccggaagcgcggatcgctgttgcgcatgggcggatgtcggagagc
cgtcttgaacagatcatggtggatttctgggagggccgctatgacgtgctcgtatccacg
accatcatcgaaaccgggttggatatcgctaacgcgaacacgctgatcgtggaccgcgcg
aataactatggtctttcgcagcttcaccagttgcgtggccgtgtggggcgtggccgtgac
cgcgcgtacgcgtatttcttgtgggatccggagcgtccgctgggcgaggtcgcgcttgag
cggctcaaggcggttgcggcgcacaatgaattgggttcgggccatcagctggctatgaag
gacctcgaattgcgcggcgccggcaaccttctgggtggtgagcagtccggccacattcag
ggcgtcggattcgacctgtatatccgcttggtcggtgaggccgttgctgcgttcaagggc
gatacggaatccacgagccaggaaatgaagatcgagcttccgttgaacgctcacttccct
gaagactacgtgccgagcgagcgtttgcgccttgaggcctacaggaagcttgcgcaggcc
gctgaaccggaagcagtcgatgcggtggtcgaggaacttaaggaccgttacggtgacctt
ccggaggctgcgcaactgttggtttcggttgcgcgggtgcgtattgtggcgcgttcggtg
aacatcaacgagatccaggcccaaggtaactacatccgcttcgcgccggacaacctcgct
gaatcgcgggtcatgcggatgaaacgcctgtacccgggcgcgatgcacaagcctgcgctg
aaagccgttctggctccgttcccgaaggggaaggggctcggcgctcaacggcttgctgac
caagaactactcgactgggttgagacgttcctgactaacgtgttcggagaatcctag
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