Pseudomonas alvandae: KSS97_06350
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Entry
KSS97_06350 CDS
T07736
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
palv
Pseudomonas alvandae
Pathway
palv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS97_06350 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palv03019
]
KSS97_06350 (rhlB)
Enzymes [BR:
palv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS97_06350 (rhlB)
Messenger RNA biogenesis [BR:
palv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS97_06350 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
QXI54555
LinkDB
All DBs
Position
complement(1449017..1450495)
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AA seq
492 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPVSSAPVQAQSRTDAQQPRRTAPPVAQAMTTPTTSPAGQP
VAVPAQEKPRSEAPRPRRERAPKPPVVAWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQD
LGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPR
ALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRL
LDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDV
MNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANR
KDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGI
SHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGRKISCEMPP
THLLRPVERKRP
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggtaaaagcgaggccgagcagctcgcg
cccgtttccagcgcgccagtccaagcccagagccgcaccgatgcgcaacaaccgcgccgg
accgctccgccggttgcgcaggccatgacaacgccgacgacctcacccgctggccagcct
gtcgccgtaccggcccaggaaaagccacgtagcgaagcgccaaggccgcgccgcgaacgc
gcaccaaaaccgcccgtcgttgcctggaagcttgaagatttcgtcgtagaaccccaggaa
ggcaagacccgcttccacgatttcaagctcgcccctgaactgatgcacgccatccaggac
ctgggtttcccctattgcacgccgatccaggcgcaggtgctcggttacaccctcgctggc
aaagacgccatcggccgcgcccagaccggtacaggcaagaccgccgcgttcctgatctcc
atcatcacccagttgctccagactccgccgcccaaggaacgctacatgggcgaaccgcgg
gcactgatcatcgcgccgacccgcgaactggtggtacagatcgccaaggacgccgccgac
ctgaccaagtacaccggcctgaacgtcatgacgttcgtgggcggcatggatttcgacaag
caactcaagcacctcgaagcccgccactgcgacatcctcgtggccacgcccggtcgcctg
ctggacttcaaccagcgcggcgacgtgcacctggacatggtcgaggtgatggtgctggac
gaagccgaccgcatgctcgacatgggcttcatcccgcaggtgcgccagatcattcgccag
accccaccgaaaagcgaacgccagaccctgctgttttccgccaccttcaccgaagacgtg
atgaacctggccaagcagtggaccaccgatccggccatcgtcgagatcgaagccgagaat
gtcgccagcgagaacgtcgagcagcatatctacgccgttgccggtgccgacaagtacaag
ctgctctacaacctggtcaacgacaacggttgggagcgggtgatggtattcgccaaccgc
aaggacgaagtacgccgtatcgaagaacgcctggtgcgcgatggcgtcaacgccgcccag
ctctccggcgacgtaccgcagcacaagcgcatcaagaccctcgaaggtttccgcgaaggc
aagatccgcgtgctggtcgccaccgacgtggccggtcgcggcatccatatcgatggcatc
agccatgtgatcaacttcaccttaccggaagtgccggacgactacgtgcatcgcattggc
cgcaccggtcgtgccggagccgcgggggtttcgatcagcttcgccggcgaagacgactcc
taccagttgccgtcgatcgaagcgctgctgggtcgcaagatcagctgcgagatgccaccg
actcatctgttgcgaccggtcgagcgcaaacggccttag
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