Pseudomonas alvandae: KSS97_16010
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Entry
KSS97_16010 CDS
T07736
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
palv
Pseudomonas alvandae
Pathway
palv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KSS97_16010 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palv03400
]
KSS97_16010 (ligD)
Enzymes [BR:
palv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KSS97_16010 (ligD)
DNA repair and recombination proteins [BR:
palv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KSS97_16010 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QXI51060
LinkDB
All DBs
Position
complement(3595980..3598598)
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AA seq
872 aa
AA seq
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MTSKNLDDYNRMRDFAATPEPAAKRSRKSTKTAHALQYCIQKHDATRLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDV
HQAYEKGRLKFELRGEKLAGLWNLVRTHMPGKQEQWFLIKHQDDAARPESEYDVVAAEPD
SVLSDRTIVPKRRGKAAAAKPVKQPEEPAKPKSTKKTGKTTLSGAVAGPMPETLKPELAT
LVESAPDGDWLYEIKFDGYRVMARIDNGDVRLITRNGHDWTHKLPKQAEALAALGLESAW
LDGEMVVANEQGVPDFQALQNAFDAGSSGKIAYYLFDLPYLNGMDLRKVPVEERRAALAA
VLEPNEDPLLRFSDSFEETPEALLNSACQMRMEGLIGKRQGSAYVSRRSSDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDVDSGELRYAGKVGTGFNETTLKSIYQQLLPLET
KKAAVVNPPTGYDAKGVHWLQPELLAEVAFAEMTKEGSVRHAVFHGLRNDKPAKAITQEL
PKTVKKTAAKDEDEAAPAKAKAKAKAKPKAAQSPTLDGKVRITHPDRVIDASSGTTKMQL
AEYYASVADFILPELADRPVALVRAPDGIAGELFFQKNPERLAIPGITSLDKDLTGQPIM
IINNAEALIGAVQMSTVELHTWNGTSVDLDKPDRFVLDLDPDPALPWKSMVEATQLTLSV
LDELGLKAFLKTSGGKGIHIVVPITRKLGWDEVKGFSHAIVSHIAKLLPDRFSAVSGPKN
RVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPIYREEVAELKGANLWNVHNVHERLA
EVGHEPWADLRKTRQSITADMRRRIGMKKTVK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcaagaacctcgacgattacaaccgcatgcgcgatttcgccgccaccccggag
ccggcggcgaagcgctcgcgcaaatcgacgaaaaccgcccacgccttgcaatactgcatc
cagaagcacgatgccactcggttgcattacgatttccgcctggagctggacggtgcgctg
aagagctgggcggtgcccaaggggccgtccctggacccgaaggtcaagcgcctggcggtg
cacgttgaagaccacccgctggactatgcgacctttgagggcagcattcccgaggggcat
tatggcgccggtgacgtcatcgtctgggaccggggcgtgtggattccccagggcgatgtg
caccaagcctacgaaaagggccggctcaagttcgaattgcgcggggaaaagctcgcgggc
ctgtggaacctggtgcgcacccatatgccgggcaagcaggagcaatggttcctgatcaag
catcaggacgacgcggcccggccggaaagcgagtacgacgtggtggcggccgagcctgac
agcgtgctcagcgaccgcaccatcgtgcccaagcgtcgaggcaaggccgctgctgcaaaa
cccgtcaagcagccggaagaacctgccaagccgaagtcgacgaaaaaaacggggaagacc
accctcagcggcgccgtcgccggcccgatgcccgaaaccctcaagccggaactggcgacc
ctggtggaaagcgccccggacggcgactggctctacgagatcaagttcgacggctaccgg
gtcatggcgcgcatcgacaacggcgacgtgcgcttgatcacccgcaacggccacgattgg
acgcataagctgccgaaacaggccgaggccctggcggcgctggggttggaatcggcctgg
ctcgacggcgagatggtcgtcgccaacgagcaaggcgtgccggatttccaggccctgcaa
aacgccttcgacgccggcagcagcggcaagattgcgtattacctgttcgacctgccgtac
ctcaatggcatggacctgcgcaaagtgccggtggaggaacgccgggccgcgttggccgcc
gtcctcgaacccaatgaagaccccttgctgcgcttctcggactctttcgaagagaccccc
gaagcactgctcaacagcgcctgccagatgcgcatggaagggttgatcggcaagcggcag
ggcagcgcctatgtgtcccggcgcagcagcgactggatcaagctcaagtgcaagaatcgc
caggaattcgtcgtggttggcttcagtgacccgaagggcgcccgcagcgcgttcggtgcg
ctgttgctgggcctgcacgacgtcgacagcggcgaattgcgctatgccggcaaggtcggc
accggtttcaacgaaaccaccctcaagagcatctatcagcagttgttgcccctggaaacg
aaaaaagctgccgtggtcaatccgcccaccggctatgacgccaagggcgtgcattggctc
cagccggagttgttggcggaagtggcgtttgccgaaatgaccaaggaaggctcggtacgc
catgccgtgttccatggcttgcgcaacgacaagccggccaaggcgatcacccaggaattg
ccgaaaaccgtgaagaagaccgcggccaaggacgaggacgaagcggcgccggccaaggcg
aaagccaaagccaaagccaagcccaaggctgcgcagtcgccaacgttggacggcaaggtc
cgcatcacccatccggatcgggtcatcgacgcgagcagcggcacgacaaaaatgcaactg
gccgaatactacgccagcgttgccgatttcatcctgccggaactggccgaccgtcctgtg
gcgctggtcagggcgccggatggcattgcaggggagttgttcttccagaagaaccccgaa
cgcctggccattcccggcatcaccagcctggacaaggacctgaccgggcaacccatcatg
atcatcaacaacgccgaggcgctgattggcgcggtgcagatgagcaccgtggagctgcac
acctggaacggcacttccgtggacctggacaagcctgatcgcttcgtcctggaccttgac
ccggacccggcactgccttggaaaagcatggtggaagccacgcaactgaccttgtcggta
ctggatgaactgggcctgaaggcattcctgaagaccagcggcggcaagggcattcacatt
gtcgtgccgattacccgcaagttgggctgggacgaggtgaagggtttcagccacgccatc
gtcagccacatcgccaagctgttgcctgatcgtttctcggcggtgtcggggccgaagaac
cgggtagggcggatcttcatcgattacctgcgcaacggcctgggcgccacgaccatctgc
gcctacgccgcccgtacccgcgaggggttgccggtgtcggtgccgatctaccgcgaagaa
gtggccgagctcaagggcgccaacctgtggaacgtgcacaacgtccatgagcgactggca
gaggtggggcatgagccttgggctgacctgcgcaagacccgccagagcatcaccgccgac
atgcggcggcggattgggatgaagaagactgtcaagtag
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