Pseudooceanicola algae: PSAL_027020
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Entry
PSAL_027020 CDS
T06943
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
palw
Pseudooceanicola algae
Brite
KEGG Orthology (KO) [BR:
palw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
palw03009
]
PSAL_027020 (rlmD)
Enzymes [BR:
palw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PSAL_027020 (rlmD)
Ribosome biogenesis [BR:
palw03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PSAL_027020 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Met_10
TRAM
Motif
Other DBs
NCBI-ProteinID:
QPM91449
UniProt:
A0A418SBG3
LinkDB
All DBs
Position
complement(2896759..2898021)
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AA seq
420 aa
AA seq
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MGGGSFNQTAMEYLIEKLGHHGDGMAHGADRTPVFAPMTLPGERVTGTLNGDRLENVKIV
LPSQDRVAAPCRHFRSCGGCVVQHAGDGYVATWKRGIVETALKAQGIAAEFAPVVTSPAA
SRRRATLSARRTKGGAMSGFHGRASGVIVEIPDCKLLHPALMRARPVAEALAMTGCGRKG
ELAVQATLTEGGLDISATGGRPLDEPLRFALTETAQAQDIARLAWDGEVIVTRQSPDQRF
GRARVTPPPGAFLQATAEGEAALLAAVTEITAGARKLADLFAGCGTFALPLSERAEVLAV
EGDPAMTEALVAGWKRAGGLHRLEARARDLFRNPLAAEDLKGIDAVVIDPPRAGAEAQTR
ELALSGVPVIAFVSCNPVTFARDARVLLDAGYSMGTVQVVDQFRWSSHVELVAGFTLTTA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
gtgggcggcggctcatttaaccagacggccatggaatatctgatcgagaaacttggccat
catggcgatggcatggcccatggcgcggatcgtaccccggtctttgccccgatgaccctg
cccggcgaacgcgtcaccggcacgctgaacggcgaccgtctggaaaacgtcaagattgtg
ctgccctcgcaggaccgcgtcgcggcgccctgtcggcatttccggtcctgcggtggctgc
gtggtgcaacatgcgggtgatggctatgtcgcgacatggaaacgcggcatcgtcgaaacg
gcgctgaaggcccaggggatcgcagcggagtttgccccggtcgtgacctctccggcggca
tcgcggcggcgcgccaccctgtcggcccggcgcaccaagggcggcgcgatgtctggtttc
cacggtcgtgcctctggcgtcatcgtcgaaatccccgactgcaaactgctgcatccggcc
ctgatgcgcgcccgccccgtggccgaggcgctggccatgaccggctgtggtcgcaagggg
gaactggccgtgcaggcgaccctgaccgaaggcgggctggacatctcggccaccgggggc
aggccgctggacgaacccctgcgctttgccttgaccgaaactgcgcaggcgcaggatatc
gcccggctggcctgggacggcgaagtgatcgttacccggcagtcccccgatcaacgcttt
ggtcgcgcgcgtgtgaccccgccgccgggcgcctttctgcaggcgaccgcggaaggcgaa
gccgcgctgctggccgccgtgaccgagattaccgccggcgcccgcaagctggccgacctg
tttgccggctgcggcaccttcgccctgcccctgtccgaacgggccgaggttctggctgtc
gaaggcgacccggccatgaccgaggccctggtggcgggctggaagcgggccgggggtctg
catcggcttgaggcgcgggcgcgtgacctgttccgcaatccgctggcggccgaggatctg
aagggcatcgacgccgtggtcatcgacccgccccgcgccggagccgaggcacagacccgc
gaacttgccctgtcgggtgtgccggtgatcgccttcgtgtcctgcaacccggtgaccttt
gcccgcgacgcgcgtgtgctactggatgcgggctattccatgggcacggttcaggtcgtg
gatcagttccgctggtcgtctcacgtggaacttgtggccggtttcactctcacaaccgcg
tga
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