Populus alba (white poplar): 118033630
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Entry
118033630 CDS
T07314
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118033630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118033630
03041 Spliceosome [BR:
palz03041
]
118033630
03009 Ribosome biogenesis [BR:
palz03009
]
118033630
03016 Transfer RNA biogenesis [BR:
palz03016
]
118033630
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118033630
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118033630
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118033630
Complex C
U4/U6.U5 tri-SnRNP related factors
118033630
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
Helicases
118033630
Transfer RNA biogenesis [BR:
palz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118033630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
DBC1
Motif
Other DBs
NCBI-GeneID:
118033630
NCBI-ProteinID:
XP_034894574
LinkDB
All DBs
Position
Unknown
AA seq
999 aa
AA seq
DB search
MEDTLTPAKRKELEKEEEVQEEEKAEIAGTPQKQDSALKKRILTRTCVHEVAVPHGYESN
KDETFHGTLSNPLFNGEMAKSYAFELDPFQKVSVACLERNESVLVSAHTSAGKTAVAEYA
IAMAFREKQRVIYTSPLKALSNQKYRELHQEFQDVGLMTGDVTLSPNASCLVMTTEILRG
MLYRGSEILKEVAWIIFDEIHYMKDRERGVVWEESIIFMPQVIKMVFLSATMSNATEFAE
WICHLHKQPCHVVYTDFRPTPLQHYVFPVGGAGLYLVVDESEQFREDNFMKLQDTFSKQK
AGEGNKSANAKASGRISKGGNASGGSDIYKIVKMIMERKFQPVIVFSFSRREVEQHAMSM
SKLDFNTQEEKDIVEQVFNNAILCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGR
RGKDERGICIIMIDERMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHV
IRNSFHQFQYEKALPDIGEKVSKLEEEAAVLDASGEAEVAGYHNLKLEMAQLEKKMMKEI
TRPERILYYLCTGRLIKVREGGTDWGWGVVVNVVKKPTAGLGTLPSKGAGYIVDTLLHCS
PGPSESGSRPRPCPPRPGEKGEMHVVPVQLPLICALSKVRISIPADLRPLEARQSILLAV
QELGNRFPEGLPKLNPVKDMKIEDPEIVELVNQIEELEQKLHAHPLHKSQDINQMKSFHR
KAEVNHEIQQLKSKMRDSQLQKFREELKNRSRVLKRLGHIDADGVVQVKGRAACLIDTGD
ELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIHLRTELAKPLQQLQESARKIAE
IQYECKLDINVDEYVESTVRPFLVDVVYCWSKGASFSEVIQMTDIFEGSIIRSARRLDEF
LNQLRAAAQAVGEVSLESKFAAASESLRRGIMFANSLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggaggatacactaacacctgctaagagaaaagagcttgagaaggaggaggaagtacaa
gaggaagagaaagcagagattgctggtacaccacagaagcaagattctgctttgaaaaag
aggattttgacacggacttgtgttcatgaagttgcagtcccacatgggtatgagtcgaat
aaagatgaaacctttcacgggactttgtcgaatccattgtttaatggggagatggcaaaa
agttatgcatttgaactcgacccttttcagaaggtgtctgtagcttgtttggaaaggaat
gagagtgttttagtctctgctcatacgtctgcagggaaaactgctgttgctgagtatgcg
attgcaatggctttcagagaaaagcaaagggttatttatacttctccgctgaaagccttg
agtaatcagaagtatagggagttgcatcaggagtttcaagatgttgggttgatgactgga
gatgttaccctgtcaccaaatgctagttgtttggttatgactacagagattcttaggggg
atgctttataggggttcagagattttgaaggaagttgcttggattatttttgatgagatt
cactatatgaaggatcgtgaaagaggggttgtttgggaagagagtattatttttatgccg
caagtgattaaaatggtttttctttctgcgactatgtcgaatgccaccgagtttgcggaa
tggatttgtcatttgcataagcagccttgccatgtggtttacacagattttcgaccaact
cctttgcagcattatgtttttcctgtgggcggtgctgggttgtatcttgtggttgatgag
agtgagcagtttagggaggacaattttatgaagctgcaggatactttctctaagcagaaa
gctggtgaggggaacaagagtgcaaatgctaaagctagtggaaggatttcaaagggtggg
aatgcttcagggggttctgacatatacaaaattgtcaagatgattatggaacggaagttt
caaccagttatagtttttagcttcagtaggagagaggttgaacaacatgccatgtctatg
tctaagcttgattttaatacacaagaggaaaaggatattgtggagcaggtttttaacaac
gcgatactctgcttgaatgaggaagacaggaatttgcctgctattgagttaatgttgcct
ctacttaagcgaggcattgctgtccatcattccggtcttctccctgtaatcaaggaacta
gtagagcttcttttccaggaaggccttgtgaaggctctgtttgccacagagacatttgcg
atgggtttaaacatgcctgcaaagactgttgttttcacagctgttaagaagtgggatggt
gatagtcatcgttacattggatctggtgagtatatccagatgagtggaagggctggacga
cgtggtaaagatgagcggggtatttgtatcataatgattgatgaacggatggagatgaat
acactcaaagacatggttttgggcaaaccggctcctctagttagtactttcagactgagc
tactattcgatattaaatctaatgagccgtgctgaaggccagttcactgctgaacacgtg
ataagaaattcatttcatcaattccagtacgaaaaggctttaccagacataggggaaaag
gtttcaaaactggaagaggaagctgctgttcttgatgcatcaggagaggctgaagttgct
gggtatcataatctaaaacttgagatggctcagcttgagaagaagatgatgaaggaaata
acaaggcctgaaagaattctttattatctatgcactggtcggttgatcaaggtaagagaa
ggaggaactgattggggttggggagttgtagtgaatgttgttaaaaagcccactgcagga
ttgggaacattgccatcaaaaggtgctggttatatagtagatactttacttcattgctct
cctggaccaagtgagagtggctcccggccaagaccgtgtccacctcggcctggagaaaag
ggtgagatgcatgtggttcctgttcagttgcccctgatctgtgctctaagcaaagtgagg
atatccattcctgctgaccttcggccattggaagcaaggcaaagtatacttctagcagtg
caggagttagggaatcggtttcctgaaggccttccaaagcttaaccctgtaaaggacatg
aaaattgaggatcctgaaattgttgagttggttaaccaaattgaggaattggaacagaag
ttacatgcgcatccactgcacaagtctcaagatataaaccagatgaaaagttttcatagg
aaagctgaggtgaatcatgaaattcaacaacttaagtcgaaaatgcgtgattcccagctt
caaaaattccgtgaagaacttaagaaccgttcacgggtcttgaaaaggcttggtcatata
gatgctgatggtgtagttcaggtgaagggcagggcagcctgcttgatagacacaggagat
gaactacttgttacagaactgatgttcaatggtaccttcaatgatcttgatcatcaccaa
gttgctgctcttgcaagttgcttcattcctgtagataagtcaagtgagcaaatacatttg
agaactgaacttgctaaaccattgcaacaactccaagagagcgcaagaaaaatagcagag
atacaatatgaatgcaaattggacataaatgtcgatgaatatgtggaatcaacagtcaga
ccgttcttggtggatgtggtttactgttggtcaaagggagctagtttttctgaggtcata
caaatgactgatatctttgagggtagcattatcagaagtgctagaagattagatgagttt
ctgaatcagttgcgtgctgctgctcaagctgtgggtgaagtcagtttagaaagcaaattt
gcagctgccagcgaaagccttcggcgaggtatcatgtttgcaaattctctttacctttaa
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