Populus alba (white poplar): 118054220
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Entry
118054220 CDS
T07314
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118054220
09122 Translation
03013 Nucleocytoplasmic transport
118054220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118054220
03041 Spliceosome [BR:
palz03041
]
118054220
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
118054220
Spliceosome [BR:
palz03041
]
Complex C
Other components
EJC/TREX
118054220
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118054220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
118054220
NCBI-ProteinID:
XP_034921593
LinkDB
All DBs
Position
Unknown
AA seq
608 aa
AA seq
DB search
MEEFRRAILQSGPIESFALQTVQEFIKPQKQTKLVQDENQLLENMLRTLLQELVSSSAQS
REEIMLYGKSIDDGEDSQGQIPRLLDVVLYLCERDFVEGGMIFQLLEDLTEMSTMRNCKD
IFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKEPPAAISLDFNFYKTMWSLQEYFCDPSLTLSPIKWQKFSL
SLMVILNAFEAQPLSEEEGSANNLEEEAASFNIKYLTSSKLMGLELKDPSFRRHVLVQCL
ILFDYLKAPGKNDKDLTSESMKEEIKSREEHVKKLLEMTPPKGKDFLHKVEHILEREKNW
LWWKRDGCPPFEKQPIENKTVPDGGKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVR
TPAITDYWKPLAEDMDPSASIEADYHHKNNRVYCWKGLRVSARQDLDGFSRFTDHGIEGV
VPLELLPPDVRSKHQAKPNDRSKRAKKDEPKGASHQVEDNQIATPASEIDGEGIRTDLEA
SVTPMDSDAMATTSNISQSSTPTPDEHQKQSPDTDGGQEAGHVEADAEAEAGMIDGETDA
EVDLEAVG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaagaattcaggagggctatattgcagtctggtccaattgaatcttttgctctccag
actgttcaagaatttattaaacctcagaagcaaactaaattagtgcaagatgagaatcaa
ttgttggaaaatatgctccggacattgcttcaggagcttgtgtcatcttctgcgcagtcg
agggaggaaataatgttgtatgggaagtccattgatgatggtgaagactcacagggtcaa
attcctcgtctgctagatgttgttctatatctctgtgagagagattttgttgagggtggt
atgatattccagttgttggaagatttgacagaaatgtctacaatgagaaattgcaaggat
atttttggttacatagagagtaagcaagatatacttggaaagcaagaactttttgctcgt
ggaaaacttgtgatgttgagaacatgtaatcaacttctccgacgcctttcaaaggcaaat
gatgtcgtgttttgcggacgaattctgatgtttctagctcacttttttccactatctgaa
cgctcagctgtaaacattaaaggagttttcaacacatcaaatgagactaaatatgagaaa
gagccaccagctgccatttctctggacttcaacttctataaaaccatgtggagtttacag
gagtacttttgtgacccttcccttactctttctccaatcaagtggcaaaaattctcattg
agtttgatggtcatcttgaatgcctttgaagctcagcctttgagtgaggaagaaggaagt
gctaacaatttggaggaagaggcagcatcatttaacataaagtatctcacaagcagtaaa
ctgatgggtttagagttaaaagatccaagttttcggcgccatgttcttgtgcagtgtctc
atactgtttgactaccttaaggccccaggaaagaatgacaaagatttaacatctgaaagc
atgaaagaagaaataaaatctcgcgaggagcatgtaaagaagttgcttgaaatgactcca
cctaaaggaaaagattttcttcacaaggttgagcatatactagaacgtgaaaagaattgg
ctgtggtggaaacgtgatggttgccctccatttgaaaagcagccaatagagaacaagaca
gttccagacggaggtaaaaaacgtaggccaaggtggaggctaggaaataaagagctctca
caattgtggaagtgggcagatcagaatccgaatgccttgactgatcctcaacgtgttcga
actcctgccatcacagattactggaaaccattggcagaagatatggatccatcagctagc
atagaagctgattatcaccacaagaataaccgggtttattgctggaaaggtctccgtgtc
tctgctaggcaggatttggatggtttctctcgatttactgaccatggtattgaaggagtt
gttcctttagaactattgccaccggatgtccggtccaaacaccaagctaaacccaatgac
aggtctaaacgtgccaaaaaggatgagccaaagggtgcttcacatcaagtggaagataat
cagattgcaacacctgcaagcgagattgatggtgaaggaatcagaactgatcttgaagcc
tctgttacaccaatggactctgatgccatggccacgaccagcaatatatcacagagcagc
actcctacaccagatgaacatcaaaagcagagccccgacacagatggtggtcaagaggca
ggccacgtagaagcagacgctgaagcagaggcagggatgatagacggagagactgatgcg
gaggtagatttagaagcagttggctga
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