Populus alba (white poplar): 118056539
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Entry
118056539 CDS
T07314
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118056539
03015 mRNA surveillance pathway
118056539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118056539
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118056539
mRNA cycle factors
P-body specific factors
118056539
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
118056539
NCBI-ProteinID:
XP_034924666
LinkDB
All DBs
Position
Unknown
AA seq
524 aa
AA seq
DB search
MKKKKEPLGRTKVVIRHLPPSLSQSNLFSQFDHLFCHRYNWFRFRPGNSSHKNQRYSRAY
IDFKNPEDVLEFSDFFHGHVFVNEKGSQFKAIVEYAPFQHVPKSCPHKDYCEGTIYTDPD
YLEFLKCIAKPARNPPSAEIKLERKEAEESEAVKGAPISTPLMEFVRKKRADKGGQGPAV
VKNRKRAGSASLTNSGSSNTKQGSGKKRYILKDSTKNSNWKGKSIIIMARKQEGLPTTSG
GKEISEVESISGVEGSVSKISLDAESGRKKNLLLDGKKREISLESEGPLHQLGLTSNFGS
SVSTAAKQYQRHEASERLIKSILPSKAASAKKKFQNLEVENDKQPIQPKTTQVGLNGHVP
YKEPLASMSDNDVKRSSYDKLVKKDQHDPGSHFEKREKHSRNKDRPCRGVWTPVRNCPSK
HANAEHLTSSILQSEVHSDSVRATHGEVKDGTQNRDHNQGSAGSTSGSNNSSAENGSRRD
FGRQVTAHNIMLYSSPSATGGKFSKKGGHAGYTAQEKQVWVQKS
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaagaaggaacctttaggaagaaccaaagtagtgataaggcatttgccacct
tctctttctcaatcaaatctcttctctcaattcgatcatcttttctgccatcgttacaac
tggttccgcttccgccccggcaactccagccacaagaatcagaggtattctcgagcttat
attgacttcaagaatccagaagatgttttggagttttcggacttctttcatggacatgta
tttgttaatgagaaaggttctcagttcaaggccatagttgagtacgctccttttcaacat
gttcctaagtcatgccctcataaagattattgtgaagggactatttacacagatcctgat
tatctggagttcctcaaatgtattgccaaacctgcgcggaatcctcctagtgctgaaatt
aagttagaaagaaaagaagcagaggaatctgaggctgtaaaaggagctcctatttctaca
cccttgatggaatttgttcgtaagaaacgagctgataagggtggtcagggtccagctgtt
gttaagaacaggaaaagagctggatcagcgtctcttaccaattctggttcaagtaatacc
aaacaaggctctggaaagaaaaggtatattctcaaggacagcaccaagaattcaaattgg
aagggcaagtcgattatcatcatggcacggaagcaggagggcctacctactacttcaggc
ggaaaagaaatatcagaagttgaatccatttctggagttgaaggttctgtttctaaaatt
tctttggatgctgagtctggaaggaaaaaaaatttgcttcttgatggaaaaaagcgtgaa
atttctcttgaatctgaggggccattgcatcagttgggcctcacttctaattttggaagt
tcagtttctactgctgctaaacagtatcagaggcatgaagctagtgagaggctgataaaa
agtattctaccttcaaaagctgcctcagccaagaagaaatttcaaaacctagaggtggag
aatgacaagcaaccaattcagcctaaaaccacgcaagtgggtttgaatggtcatgtccct
tacaaggagcctctggcatctatgtctgacaatgatgtaaaaaggagttcatatgataag
cttgtgaaaaaggatcaacacgatcctggctctcattttgagaaacgagaaaaacattca
agaaataaggatagaccatgtcgtggtgtttggactcctgtccggaactgtcctagtaaa
catgctaatgcagaacacttgacatcctctatattgcaatctgaagtgcattctgattct
gttcgagcaacccatggagaagtaaaagatggcacgcaaaatagggaccataatcaggga
tcagcagggtcaacaagtggaagcaataattcttctgcagagaatggttcccgtagagat
tttggtcgtcaagtgacagcccataatataatgctttatagctccccgagtgcaactgga
ggaaaattttccaaaaaaggaggtcatgctggctatactgcccaggagaaacaagtatgg
gtccagaagtcttaa
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