Populus alba (white poplar): 118059476
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Entry
118059476 CDS
T07314
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118059476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118059476
03019 Messenger RNA biogenesis [BR:
palz03019
]
118059476
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118059476
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118059476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
118059476
NCBI-ProteinID:
XP_034928256
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MQPTKLLNPKAATKAAAAAAVTTTMPNELLPQKPSASSVLDKFRSLLKQRQGLAVEDHGG
GDGASLRMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPV
DQKLPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFP
SSVLHKIETQLHFSPQVNDQSSSLTSFRASESPRPPHGIHVNPKYLRQLDHSTADNTGWS
IQTYKAKNVIQSLQNVHHTTGTSSNLKIYGKKPAVGYDEYESDQAEAISSQVGVGRTSLT
LGSNKLQPSSTSRLARRLSPSTTGAERPSSSEIDDFVVGNSPRRFVEGLSPSHPLFDYGH
SRAIVRDEEANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALIDAYGDDRGKRTTS
KPLHIEQLAVNGVRNKVASRSWQNTEEEEFDWEDMNPTLSERGRSNDFLPSSIPPFGSVV
PRPAFGRLSAIHAESDIRSNRSSLAPMAFVDGSSNIAEEAVSILGSGRGSTGNVPGFRTE
RNQILGSRHHQEAWNFPPHTHQSAHLLNSKGRGRDFQMPLSGSGVSSLGGENYSPLAEKL
PDIDAQLNRPPAIASRWGSNIDSTSSGTWSSVAPPSSGVWPPVNARKSLPPPVHRIFPPP
EQSRSQFDPINASSTVINQVLQKGSVISEQPFNSFKNKDYNLMKPTPMSNQHAALNQQNQ
AHVNPFQPQQLPSHEARENFHPSGVTSMPPRPLAPPLSHGYNTHGHSTAISMVPSNALPA
VQLPLPVNNIPNMLHSQVGVRPPLPPGPPPQTMPFPQNASSGVPGQPSGSAFSGLFNSLM
AQGLISLTKQTPVQDSVGLEFNADLLKLRYESAISALYGDLPRQCTTCGLRFKCQEEHST
HMDWHVTKNRMSKNRKQKSSRNWFVSASMWLSGAEALGTDAAPGFLPTETTVEKKDDDEM
AVPADEEQSTCALCGEPFDDFYSDETEEWMYRGAVYLNSSNGSTAGMDRSQLGPIVHAKC
RSDSSVVPPEDFGHDEGGNSEEGNQRKRMRS
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccacaaaactcctaaaccctaaagccgccaccaaggcggctgctgcggcagcc
gttaccaccaccatgccaaatgaactgctgccacagaaaccatcagcatcgtcagttctt
gacaagttccggtctttattgaagcaacgacaaggattagcggtggaggaccatggtggt
ggtgacggggcaagtttgcgtatggaggatgtggtggagatttatgagacggttttgaat
gaattgacgtttaattcaaaacctataattactgatttgactattattgctggagaacag
cgggagcatggtgagggtattgctgatgttctatgtgcccgcattgttgaggcccccgta
gatcaaaagctgccttcattatatcttctagatagcattgtcaagaatattggccgtgaa
tacattaggcacttctcgtcccgtttgcctgaggttttttgtgaggcatacagacaagtt
gaccctagcttatatccttcaatgcgccacctttttggcacatggtcctcagtgtttcca
tcttctgtacttcacaagattgagactcaacttcatttttctccacaagttaatgatcag
tcatcaagcttgacttcctttagagcttctgaatcacccagaccacctcatggcatacat
gtgaacccaaaatacttgcgtcagctggatcattcaactgcagataatacagggtggtca
atacaaacatacaaagctaaaaatgtaattcaatctttgcagaatgttcatcacactacg
ggaacttcttcaaatctgaaaatatatggtaaaaaacctgctgttggatatgatgaatat
gaaagtgatcaagcagaggccatatcttcacaggttggggtgggccgtacatctctcact
cttggatctaataagctgcaaccatcttcaacttccaggcttgcaagacgcttgtcgcct
tcaacaactggagccgagaggccttcatcttcagaaattgatgactttgtagtagggaat
tcacctcgaagatttgttgaggggctgtccccatctcatcctctatttgattatggacac
agcagagctattgtcagagatgaggaggcaaatgaattaagaagaaataactattctgat
gataaccataaccgatttgaaccttctgctagatataggcttagcaatggacttgaacat
caaggacccagagctttaatagatgcatatggggatgatagggggaaaagaactactagt
aaacctctgcatattgaacagttagctgtaaatggtgtgcgcaataaggtagcttcaaga
tcatggcagaatactgaagaagaggaatttgattgggaagatatgaaccctactttgtca
gagcgtggtaggagtaatgatttcttgccatcatctattccaccttttggaagtgttgtt
ccaaggcctgcctttggaaggctaagtgctatccatgcggaatctgatatcaggagcaat
cgatctagtctggctccaatggcatttgtggatggctcctctaatattgctgaagaagca
gtctcaattctgggttctggccgtggatcaacaggcaatgttcctggattccgaactgag
agaaatcagatcttgggttcccgtcatcatcaagaagcttggaattttccacctcacacc
catcagtcagcacatctcctgaattctaaaggaagaggaagggatttccagatgccctta
tctggaagtggtgtgtcttctttgggtggtgagaattactctccacttgctgaaaaactt
ccagatattgatgcacagcttaataggcctcctgccattgcatcaagatggggctctaat
attgactctactagttcagggacctggtcaagtgttgcgccaccatcctcaggggtctgg
cctccagtaaatgcacgaaagtctctgccacctcctgtgcatcgtatttttcctccacca
gagcagagtagaagtcagtttgatccaataaatgccagcagcactgtcataaatcaggtt
ttacaaaagggttcagttatatctgaacaaccatttaatagttttaagaacaaagattac
aatttgatgaagccaacaccaatgtctaatcagcatgctgctttgaatcagcaaaaccag
gcacatgtaaatccttttcagccacaacaacttccatctcatgaagcccgagagaatttt
catccatctggggtaacttcaatgccacctcgtcccctggcaccaccactgagtcatgga
tacaacactcacgggcatagcactgccattagtatggttccttcaaatgcattacctgct
gtacaactgcctttaccagtcaacaatattccaaatatgttgcattcacaggtgggggtt
cggccacctctgccacctggtcctcctccccaaacaatgcctttccctcagaatgctagt
tcaggtgtccccggccaaccatctggcagtgcattttcgggtttgtttaactctctcatg
gcacaaggtttgatctcattgacaaaacaaactcctgtgcaggactctgtgggacttgag
ttcaatgctgaccttctcaagctgcgctatgaatctgcaatcagtgcattgtatggtgat
ctgccaagacaatgcacaacatgtggccttcggttcaagtgtcaagaagagcacagtact
cacatggattggcatgttactaaaaaccggatgtctaagaaccggaagcagaaatcttct
cgcaactggtttgtaagtgcaagtatgtggctcagtggtgcagaggcattgggaactgat
gcagctcctggttttttgcccactgagaccactgtggagaagaaggatgatgatgaaatg
gctgttcctgctgatgaagagcagagtacatgtgcattatgtggagagccttttgatgat
ttctacagtgatgaaactgaggaatggatgtatagaggagctgtctacctgaattcatct
aatggatcaacagcaggcatggataggtctcagttaggtcctatagtacatgctaaatgc
agatccgattctagtgtggttcccccagaagattttggacatgatgaagggggaaattct
gaagagggtaatcaaagaaaacgaatgcggagttaa
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integrated database retrieval system
