Pseudomonas amygdali: BKM19_011855
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Entry
BKM19_011855 CDS
T05354
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKM19_011855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_011855
Enzymes [BR:
pamg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKM19_011855
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BKM19_011855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
DUF6732
Motif
Other DBs
NCBI-ProteinID:
AVB14207
LinkDB
All DBs
Position
complement(2316653..2320105)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPHLSAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELKHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPF
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGAGRERFPTQTLPDL
SIEAKASQPLAALSTFLDDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWQDFVDG
KDRLAITIAPLDDGLLLEQPALALVAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
ESAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYL
PDVHTRLILYKRIANAADEEALKDLQVEMIDRFGLLPEPTKNLVRITLLKLHAEQLGIKK
IDGGPQGGRIEFATETPVDPLTLIKLIQSQPNRYKFEGATLFKFLVPMERPEERFNTIEA
LLERLTPKTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgccagttctgcgtctaccgcatctttctgccgctgcaggcaaacaacactggggcaat
cttcccggtgccgcactgagcctggccattgccgaggccgccagcgcagccaagcgcttt
accctgctactgaccgccgacagccagagcgccgagcggctggagcaggagctgaagttt
ttcgcgcccacgctgccggttctgcacttcccggactgggaaaccctgccctacgacctg
ttttcgccgcaccaggacatcatttcccagcgcatcgccagcctttatcgcctgccggag
ctgaagcatggcgttttggtagtaccgatcacgaccgccctacacagactcgcgccgacc
aaattcctgctcggcagcagcctggtgctggatgtcggccagaagcttgatgtggaggcc
atgcgcacgcgcctggaagccagcggctatcgctacgtggacacggtttacgagcacggc
gagttcaccgtgcgcggcgcactgatcgacctgttcccgatgggcagcaagctgccgttc
cgtatcgacctgttcgacgatgaaatcgaaaccctgcgcaccttcgatccggacacgcag
cgttccatcgacaaggtcgagtcggtgcgcttgttgcctgcccgcgaattcccgctacag
aaagaagaagtcacgcgcttcaaggcgcgttttcgcgagcgcttcgacgtggacttccgg
cgcagcccgattttccaggacttgagcagcggcatcacgcccgccggtatcgagtactac
attccgttgttctttgaggaaacctcgacgctgttcgattatctgccgcaggacactcag
gtgttttccctgccgggtatcgagcaggccgcagagaacttctggaacgacgtgcgcaac
cgctatgaagaacgtcgcgtcgaccctgcacgaccacttctgccaccggccgagctgttc
ctgccggtggaagattgctttgcacgcttgaaaaactggccgcgcgtggtggccagccag
caggatgtcgatgccggagccgggcgcgagcgcttcccgacccagaccctgccggacctg
tccattgaagccaaggccagtcagccactggcggcattgtcgacatttcttgatgacttc
cccggtcgcgtgctgtttaccgccgagtccgccggtcgccgtgaagtgctgctggaactg
cttgaacgcctgaagctgcggccgaaaacggtcgacagctggcaggacttcgtcgatggc
aaggacaggctggcaatcaccatcgccccgctggacgacggcctgctgctggagcaaccg
gcactggcgctggtcgctgaaagcccgctgttcggccagcgggtcatgcagcgccgccgt
cgcgaaaagcgcaccgatggcggcaataacgacgccgtcatcaagaaccttaccgaactg
cgtgaaggcgcgccggtggtgcacatcgaccatggcgtgggccgctatctggggctggcg
acactggaagtcgaaaatcaggtcgccgaattcctgatgctggcctacgccgaggatgcc
aagctgtacgtcccagtcgccaacctgcacctgattgcccgctacaccggcagcgacgac
gagagcgcgccgctgcaccgcctgggctcggaaacctggcagaaagccaagcgcaaggcg
gccgagcaggttcgcgacgtggctgccgagctgctggatatctacgcacgccgggctgcc
cgcgagggttatgccttcgccgacccgaaagccgactacgccaccttcagtgcgggcttc
ccgttcgaagaaacgccggatcagcagaccaccatcgaggccgtgcgcgccgacatgctg
gcacccaaaccgatggatcgcctggtgtgtggcgacgtaggcttcggcaagaccgaagta
gccatgcgcgccgccttcattgccgtgcacggcgggcgtcaggtggccattctggtgccg
accaccctgctcgcccagcagcactacaacagcttccgcgaccgtttcgcagactggccg
gtgacggtcgaagtgatgagccgcttcaagtcggccaaggaagtcagtgccgccgttgcc
gatctggccgagggcaagatcgacatcgtcatcggtacgcacaagctgttgcaggatgac
gtcaagatcaagaatctcggtctggtgatcatcgacgaagaacaccgcttcggtgtccgc
cagaaagaacagctcaaggcactgcgcagcgaggtcgacattctgaccctcaccgcaacg
ccgattccgcgaaccctgaacatggccgtgtcgggcatgcgtgatctgtcgatcatcgcc
acgccaccggcgcgcaggctgtcggtacgcaccttcgtcatggagcagaacaagccgacc
atcaaggaagccctgctgcgcgagttgctgcgcggcggccaggtctactacctgcacaac
gacgtcaaaaccatcgagaaatgcgcggcggatctggccgaactggtgccggaagcccgt
atcggcatcggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgatttc
taccacaagcgcttcaatgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
ccgagcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagttgcac
cagttgcgcggccgcgtcggacgcagtcaccaccaggcctatgcctatctgctgaccccg
ccgcgcaagcaaatcacccccgacgccgaaaagcgtctggaagcgattgccaatacccag
gacctcggcgcgggcttcgtgctcgccaccaatgacctggagatccgaggcgcaggcgaa
ctgctcggggacggccagagcggtcagatccaggcagtgggttttaccctgtacatggaa
atgctcgagcgcgcggtcaagtcgattcgcaagggcgaacagcccaatctcgatcaaccg
ttgggcggcggaccggaaatcaacctgcgtgtaccggcattgatccccgaagcctacctg
ccggatgtacacacccgcctgattctctacaaacgcatcgccaacgcggcagacgaagag
gcgttgaaagacttgcaggtagaaatgatcgaccgcttcggcctgttgccggagccgacc
aagaacctggtgcgcatcacgctgctcaaactgcacgccgaacagctgggtatcaagaaa
atcgacggcggcccgcaaggtggacgcatcgaattcgcgaccgagactccagttgatccg
ctgaccctgatcaagctgatccagagccagcccaaccgttacaagttcgaaggtgccacg
ctgttcaaattcctggtgcccatggagcgcccggaagagcgtttcaataccatcgaagcg
ctgcttgagcgcctgaccccgaaaactgcttga
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