Paracoccus aminophilus: JCM7686_pAMI4p331
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Entry
JCM7686_pAMI4p331 CDS
T02792
Name
(GenBank) uracil DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pami
Paracoccus aminophilus
Pathway
pami03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JCM7686_pAMI4p331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pami03400
]
JCM7686_pAMI4p331
Enzymes [BR:
pami01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
JCM7686_pAMI4p331
DNA repair and recombination proteins [BR:
pami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JCM7686_pAMI4p331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
AGT11019
UniProt:
S5XU38
LinkDB
All DBs
Position
pAMI4:complement(380084..381535)
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AA seq
483 aa
AA seq
DB search
MIRVDLPRFDRFEAWRAAARHLASAEIAPEQILWATEATPPDLFGAAPWPEPGARAVQAT
PAFLTLARTVSSHSDPEAWGLLYLALMRGQSERGLWANPGDPLMIRLQALAKAVRRDIHK
MHAFLRFHELASEGPRRAFAAWFEPAHPILQAATPFFSARFTDMDWLIATPEGVARFDGV
LRFEGPSPAPDLPPDASHALWQVYFANIFNPARVKIAAMRSEMPLKYWKNLPETALIPEM
LADAPRRLQAMAEAGASTPPAFAAKVTARLRSLEAQDLPASMAEARAQAQSCSRCTLCQH
ATQTVWGEGDPDAALMVLGEAPGDREDLEGRPFVGPAGQLLRQVMAEVGLDPARLWMTNA
VKHFKFTPRGKRRMHQSPNGSEIQHCRWWLDLERRFVAPRLSLALGASAAFGLTGNHAPL
AGRRGKIETAEDGGPVLITWHPSFILRLPPAEAQRARAEFAQDLALAQQMLADREARHST
QIS
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcgtcgatctgccccgtttcgatcggttcgaggcttggcgagcggcggcgcgg
catctggccagtgccgagatcgcgccagagcagatcctttgggcgacagaggcaactccg
cccgatctgttcggtgctgcgccttggccggaaccgggggcgcgtgctgtgcaggccacg
cccgcctttctgacgctggcccgcacggtcagctctcattccgaccccgaggcctggggc
ttgctttaccttgccctgatgcgtggccaaagcgagcgcgggctttgggccaatcccggt
gatcccctgatgatccgcctgcaggctttggccaaggcggtgcggcgcgacatccacaag
atgcatgcctttttgcgttttcacgagctggcctctgaggggccgcgccgcgcttttgcg
gcatggttcgaaccagctcacccgatcctgcaggccgcgaccccgtttttttcggcgcgt
tttaccgatatggattggctgattgccacgcccgagggcgtagcacgtttcgacggtgtg
ctgcgttttgaagggccgagccccgctcccgatcttcccccagacgcgagccacgcgctt
tggcaggtctatttcgccaatattttcaacccggcgcgggtgaaaattgcggcgatgcgg
tcagagatgccgctgaagtattggaagaacctgcctgaaaccgcgctgatccctgagatg
ttggccgatgcgccgcgccggttgcaggccatggccgaggcaggcgcaagcacgcctccg
gccttcgccgccaaagtcaccgcccggctgcgcagccttgaggcgcaggacttgcccgcc
tcgatggccgaggcacgcgcgcaggcgcaaagctgctcgcgctgcaccctgtgtcagcac
gcaacccaaacggtctggggtgagggcgatccagatgccgcgctgatggttttgggcgag
gctcccggcgaccgcgaggatctggaaggtcgcccctttgtcggccccgccggtcagctt
ttgcgccaagtcatggccgaggtcgggctggatccggcgcggctgtggatgactaatgcg
gtcaagcatttcaaattcacgccccgcggcaaacgccggatgcatcaaagcccgaatggc
agcgagatccagcattgtcgttggtggctggatctcgaacgccgctttgtggccccgcgc
ctgagccttgcgctgggggcaagcgcggctttcggactgaccggcaatcacgccccgctt
gccgggcgacgcgggaagatcgagacggcagaggacggcggtccggtgttgatcacatgg
catccaagcttcatcctgcgcttgccgcccgccgaggcgcagcgggcgcgggccgaattt
gcccaggatctggccctcgcgcagcagatgctggccgatcgggaagcgcgtcattccacg
caaatctcataa
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