Paracoccus aminovorans: JCM7685_2009
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Entry
JCM7685_2009 CDS
T05468
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pamn
Paracoccus aminovorans
Pathway
pamn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pamn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM7685_2009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamn03019
]
JCM7685_2009
Enzymes [BR:
pamn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JCM7685_2009
Messenger RNA biogenesis [BR:
pamn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JCM7685_2009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DEDD_Tnp_IS110
CMS1
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CQR86571
LinkDB
All DBs
Position
I:2032860..2034353
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AA seq
497 aa
AA seq
DB search
MRADTRVAWPKDDMTQETTRPNRSGKPRSNASGQPRGDNQPRGERGGKPGFRGGNAKPTT
NHRRHRDEPEEKFIRRAIPDIDTPFTRMGIDARVAVNLPPMGIDTPSPIQEKSIPGIVEG
RDLLGLAQTGTGKTAAFGLPMLTRLLNIGRKPEPRTCRALILAPTRELATQIADNIDAYA
AGTPIRQFRVVGGASINVQIMRLERGVDVLIATPGRLIDLIERGAVDLSQTKYLVLDEAD
QMLDIGFIHALRRIAKMLPKDRQTLLFSATMPKLMEELADSYLTDPLKVAVNPPGQAAAK
IEQGVHFVNQGDKATLLAEYLAKHRDELAIVFGRTKHGSEKLSKLLEKWGYKVASIHGNK
SQGQRERALSGFRAGDTKVLVATDVAARGIDIPEVAHIYNYDLPNVPENYVHRIGRTARA
GRDGRAIAFCAPAEIGELRAIEKAMKASIPVVGGEVPFEAAKIRERGGPAGARPEGQGAR
KRPARRPSRAPKAAQRA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccgatacgcgggtcgcatggccgaaagatgacatgacgcaagaaaccacccgc
ccgaaccgttcgggcaagccgcgcagcaatgcctcgggccagccccgcggcgacaaccag
ccccgcggcgaacgcggcggcaagcccggctttcgcggcggcaacgccaagcccacgacc
aaccaccgccgccaccgcgacgagcccgaggaaaaattcatccgccgggccattcccgat
atcgacacgcccttcacccgcatgggcatcgacgcccgcgtggcggtgaacctgccgccg
atgggcatcgacaccccctcgccgatccaggagaaatccattcccggcatcgtcgagggc
cgcgacctgctgggcctcgcgcagaccggcaccggcaagacggcggccttcggcctgccg
atgctgacccggctgctgaacatcggccgcaagcccgagccccggacctgccgcgcgctg
atcctggccccgacgcgcgaactggccacccagatcgccgacaatatcgacgcctatgcc
gccggcaccccgatccggcagttccgcgtcgtcggcggcgcctcgatcaacgtgcagatc
atgcggctggagcgcggcgtggacgtgctgatcgccacccccggccggctgatcgacctg
atcgagcgcggcgccgtggacctgtcgcagaccaaatacctggtgctggacgaggccgac
cagatgctggacatcggcttcatccacgcgttgcgccgcatcgccaagatgctgcccaag
gaccgccagacgctgctgttttcggccaccatgccgaagctgatggaagagctggccgac
agctatctgaccgatccgctgaaggtcgccgtgaaccctccgggccaggccgccgccaag
atcgaacaaggcgtgcatttcgtgaaccagggcgacaaggcgacgctgctggccgaatat
ctggccaagcatcgcgacgagctggccatcgtcttcggccgcaccaagcacggctccgag
aagctgtcgaagctgctggagaaatggggctacaaggtcgcctcgatccacggcaacaag
tcgcagggccagcgcgagcgcgcgctttcgggcttccgcgccggcgataccaaggtgctg
gtcgcgaccgacgtggccgcgcgcggcatcgacatcccggaagtggcgcatatctataac
tacgatctgcccaacgtgccagaaaactacgtccaccgcatcggccgcaccgcacgcgcc
ggccgcgacggccgcgccatcgccttctgcgccccggccgagatcggcgaattgcgcgcc
atcgagaaggccatgaaggcctcgatcccggtggtcggcggcgaggtgcccttcgaggcg
gcgaagatccgcgaacgcggcggccccgccggcgcccgtcccgagggtcagggcgcccgc
aagcgcccggcccggcggccgtcgcgcgcaccgaaagcggcgcagcgggcctga
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