Profundibacter amoris: BAR1_08100
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Entry
BAR1_08100 CDS
T06831
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pamo
Profundibacter amoris
Pathway
pamo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pamo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAR1_08100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamo03400
]
BAR1_08100 (mfd)
Enzymes [BR:
pamo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAR1_08100 (mfd)
DNA repair and recombination proteins [BR:
pamo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAR1_08100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
AAA_16
UB2H
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXX97896
UniProt:
A0A347UGB8
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All DBs
Position
complement(1615904..1619368)
Genome browser
AA seq
1154 aa
AA seq
DB search
MAQPDHITLGGAPEGFDAHLLAQELLRAGRPVVHIARDDKRLVAMQSALRFYAPDAVVLS
FPSWDCLPFDRTSPNPDVSAARMATLAGLAHGMPAPFILLTTLNAATQRVPARTVLKQSA
FRARVGERIDEKALRAFLTRMGFSQTPTVMEPGDYAVRGGIIDIYPPLSAGGQGGPVRLD
LFGDVLDGARHFDPATQRTTEKLNEIELAPVSEIILDEAAVTRFRQNYRIEFGAAGLDDP
LYEAISAGRKHQGAEHWLPFFHEKLETLFDYLPDASVVLDDQTTAARLARWEAIEDQYDT
RKAAMAAKNRMDSVYKPCPPQLLYLNDADWVAAIAGHRVIQLNPLPQSTGPGVLDAGGRI
GRNFAPERQQQDVNLFKALSDHIDAQKPKGPVVVASYSEGARERLSGLLEDEGQIGLRQV
RDIREVKEGVNLVVWALEHGFTGNDVTVISEQDVLGDRLIRAPRRKRRAENFLTETQGLS
VGDLIVHVDHGVGVYKGLETITAMGAPHECIALEYAGGDRLFLPVENIELLSKFGHETGL
LDKLGGGAWQAKKAKLKERIREVAEKLIRLAAERALRKATVLEPQHHAWEAFSARFPYQE
TDDQLSAIEDVLNDMASGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGQQVAVIAPTTLL
ARQHYKSFAERFRGFPIQIGQLSRFVSAKEANLTREGIARGTVDIVIGTHALLAKSVRFQ
NLGLLVIDEEQRFGVSHKERLKEMRSDVHVLTLTATPIPRTLQMSLSGVRDLSIIGTPPV
DRLAIRTYVSEFDSVTLREALLREHYRGGQSFYVVPRIKDLPEIEAFLQDHVPEVSYVVA
HGQMAAGQLDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRG
RVGRSKTRAYAYMTTKPRVPLTPTAQKRLRVLASLDSLGAGFTLASQDLDIRGAGNLLGE
EQSGQMREVGYELYQQMLEEAIGKIRSGEIGMPDDGGKWAPVINLGVPVLIPDTYVPDLD
VRLGLYRRLSGLHTKVELEGFAAELIDRFGPLPKEVNSLLLVVRIKAMCKRAGIARLDAG
PKGATIQFHNDKFASPAGLVEFIEEQRGLAKVRDNKIVVRRDWAKTVDKIKGAYAIARDL
AQKVVNEKKAKKAK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcctgaccatataacccttggcggggcgcccgaagggtttgatgcgcatctt
ctggcgcaggaattgctgcgtgccggccgaccagtggtgcatatcgcacgcgatgacaaa
cggctggtggcgatgcaatcggccctgcgattctatgcgcccgatgcggtggttttaagc
tttccgtcatgggattgcctgccgtttgaccgcacatcccccaaccccgatgtctcggcc
gcccgcatggccacgctggccggcctggcccacggcatgcccgcgccctttatcctgtta
accacgctgaacgctgcaacccagcgggttccggcacggacggtgctgaaacaatccgcc
tttcgcgcccgcgtgggcgaacggatcgacgaaaaggccctgcgtgcttttttaacccgc
atgggattttcgcaaaccccgaccgtgatggagccgggcgattatgccgtgcgcggggga
atcatcgacatctatccaccgctatcggcaggcgggcagggtgggccggtgcggctggac
ctgtttggcgatgtgctggatggcgcacgccactttgaccccgccacccagcgcaccacc
gaaaaactaaacgaaatcgaactggccccggtctccgagatcattctggacgaggccgcc
gtgacccgctttcgacagaattaccgcatcgaattcggcgcagcggggctggatgatcct
ttatatgaagcgatcagcgcggggcgcaaacatcaaggcgccgaacactggctgccgttt
ttccatgaaaaactggaaacgctgtttgactatctgcccgatgcctcggtcgtgctggac
gatcaaaccaccgccgcccgtctggcccgctgggaagcaatcgaggaccagtacgacacc
cgcaaggcggcgatggcagcgaaaaaccggatggattcggtttacaaaccctgtccgccg
cagctgctctatctgaatgatgccgactgggtcgcggcgattgcgggccatcgggtgatc
cagttaaacccactaccgcaaagcacaggtccgggtgtgctggatgcaggcggtcggatc
gggcgtaattttgcgcccgagcgccaacagcaggatgtcaatctgttcaaggccttgtcg
gatcatattgatgcacaaaagcccaaaggaccggtggttgtcgccagctattccgaaggc
gcgcgggaacgcctttcgggcctgcttgaagatgaaggccagatcggcctgcgacaggtg
cgagacattcgcgaggtcaaagagggcgttaaccttgtggtctgggcgctggaacacggg
ttcaccggcaatgatgtgacggtgatttccgagcaggacgtgctgggcgaccggctgatc
cgcgccccacgccgcaaacggcgcgccgaaaacttcctgaccgaaacgcaagggctgtcg
gtcggcgatctgatcgtgcatgtggaccacggggtcggggtttacaaggggctggaaacc
atcaccgcgatgggcgcgccgcatgaatgtatcgcgctggaatacgcaggcggggaccgg
ttgttcctgccggtggaaaacatcgaactgctgtccaaattcggccatgaaaccggcctg
ctggacaagctgggcggcggtgcatggcaggcgaaaaaggccaagctgaaggaacgcatc
cgcgaggtggcggaaaaactgatccgccttgccgccgaacgcgccttgcgcaaagccacg
gtgctggaaccccagcaccacgcatgggaggctttttccgcccgttttccctatcaggaa
accgatgaccagctctcggcgatcgaggatgttctgaacgacatggcctcgggtcagcca
atggaccggctgatttgcggcgatgtgggctttggcaagaccgaagtcgccatgcgcgcc
gcttttgtcgccgcgatgtccggtcaacaggtggcggtgattgccccgaccacattgttg
gcacggcagcactataaatcctttgccgaacggttccgtggttttcccatacagatcggt
cagttatcccgctttgttagcgcaaaagaggccaatctgacccgcgaaggcatcgcgcgg
ggcacggtggatattgtcatcggcacccatgccctgctggccaaatccgtgcgttttcaa
aacctcggcctgctggtgatcgacgaggaacagcgctttggcgtgtcgcacaaggaacgg
ctgaaggaaatgcgcagcgacgtgcatgtgctgaccctgaccgccacgccgatcccgcgc
accttgcagatgtcgctatccggcgtgcgcgacctgtcgatcatcggcaccccgccggtg
gaccgtctggcaatccgcacctatgttagcgaatttgacagcgtcaccctgcgcgaggcc
ctgttgcgcgaacattatcgcggcgggcaatcgttttatgtggtgccacggatcaaggat
ctgccggaaatcgaggccttcttgcaggatcatgtgcccgaggtctcctatgtcgtggcc
cacggccagatggcggcaggccaactggatgaccgcatgaacgccttttacgatggtaaa
tacgatgttctgctggccaccaccattgtcgaatccgggctggacatacccaccgccaac
accatgatcgtgcatcgcgccgatatgttcggccttgcgcagctgtaccagatcaggggg
cgcgtggggcgcagtaaaacccgcgcctatgcctatatgaccaccaaaccgcgcgtgccg
ctcaccccgaccgcgcaaaaacgcctgcgggtgctggccagtctggacagtctgggggcg
gggttcacgctggcctcgcaggatctggatattcgcggggcagggaacctgctgggcgaa
gagcaatccggccagatgcgcgaagtgggttacgagctgtatcaacagatgctggaagag
gcgatcggcaagatccggtcgggcgaaatcggtatgccggacgatggcggcaaatgggcg
ccggtgatcaatctgggggttcctgtgttgataccagatacttacgtacctgatcttgac
gtgcgccttggtctctatcgccgcctgtccggcctgcataccaaggtcgagctggaaggc
tttgccgccgaattgatcgaccggtttggccccttgccaaaagaggtgaactcgctgctg
ctggtggtgcggatcaaggcgatgtgcaagcgcgccggtatcgcgcggctggatgcgggg
ccgaagggggcaacgatccagttccacaacgacaaatttgcctcgcccgccggattggtc
gaattcatcgaggagcagcgcgggctggccaaggtgcgcgacaacaaaatcgtggtgcgc
cgcgactgggccaaaacggtggacaagatcaagggcgcttacgccatcgcccgggatctg
gcgcaaaaggtcgtgaacgaaaagaaggctaagaaagcgaaataa
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