Paenibacillus amylolyticus: P9222_30920
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Entry
P9222_30920 CDS
T09036
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pamy
Paenibacillus amylolyticus
Pathway
pamy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pamy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P9222_30920 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamy03400
]
P9222_30920 (ligD)
Enzymes [BR:
pamy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P9222_30920 (ligD)
DNA repair and recombination proteins [BR:
pamy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P9222_30920 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WFR62536
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All DBs
Position
6325527..6326417
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AA seq
296 aa
AA seq
DB search
MAPKIQGTIVIEGIELTVTNPDKLLWPDAGVTKAIYLQKLAALAPYLLTYTNNRLLTTIR
YPHGAGGTFFYQKNAPEPVPDYVRTEVHDGIRYVIMNGLPELLWLGNLAALEFHPSLHAV
GSHLPCEWMIDLDPSQEHEPRIMQAALIVGETLTSLGLRSIPKTSGATGVQIIVPIIQGV
TFDELRDIGYFVGKYVTQKHPDLFTLERLKKDRGDRIYFDYLQHYGGKTLAAPYTPRAKS
GATVSTPLTWDEVKSDVSIQDYHLMNIIERLNHTGDLIAAVEPQPVELILKHLNKK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcccccaagatccagggaaccatcgtaatcgaaggcatagagctcacggtcacgaac
ccggacaaactgttatggccggatgcgggtgtcaccaaggccatctatctgcaaaagctg
gctgccctggccccctatctgctcacgtatacaaacaatcgattgctaaccaccatccga
tacccccacggcgctggagggacctttttctatcaaaaaaatgcccctgagcctgtgccg
gattatgtacgaaccgaagtccacgacggcatccgctatgtaatcatgaatggacttccc
gaattgttatggcttggcaatctggcagcacttgaatttcatccttctcttcatgctgta
ggaagccatctgccctgtgaatggatgattgatctggacccctctcaagaacatgagccc
cgaatcatgcaggccgcactcatcgttggcgaaaccttgacttcacttgggttgaggtcc
attcccaaaacttcaggagcaacaggagttcagattatcgttccgatcattcaaggtgta
acctttgatgaactgcgagacatcggctattttgttggcaaatatgtcactcagaagcac
ccggatctattcacactggaacgactcaaaaaggatcgtggagaccgcatttattttgac
tatctccagcattatggaggcaagacccttgccgctccctatacaccacgtgccaaatcc
ggggctacggtctcaactccacttacctgggatgaggttaaaagcgatgtctccattcag
gattaccatctgatgaacattattgaacgcttgaaccacaccggtgatttgattgcagct
gttgaaccccaaccggtagagctcattctcaagcatttgaacaaaaaatag
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