Paenisporosarcina antarctica: E2636_03560
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Entry
E2636_03560 CDS
T05927
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
panc
Paenisporosarcina antarctica
Pathway
panc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
panc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E2636_03560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
panc03400
]
E2636_03560
Enzymes [BR:
panc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E2636_03560
DNA repair and recombination proteins [BR:
panc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E2636_03560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
Macscav_rec
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QBP40281
UniProt:
A0A4P6ZVB3
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Position
725518..727368
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AA seq
616 aa
AA seq
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MKPMLLTAATDIPLGKEWVYEAKYDGFRCILDWEVDATPILKSRNGKVLNQMFPEIISFC
HDNQKKISSSLPLTLDGELVYLTNNFQSTFSIVQLRGRMRNQDVIMKHVKEFPCHYIVFD
LLKVKGEVQTDLSITKRKHKLQKFFQKIKLPISISYEDINRIQAIDVYQDNEVLWKHIKV
SNGEGIVAKQKNSSWISDKRTVQWLKIKNWRYVTVILTKYDKSNGFFHGAIYHKKALVEI
VTFRHGLKEEELNTLIMLFQSSGTKLAEKVWALEPSICVEIACIDFDGKYLREPRFHAFN
FDKEPSDCRWQQMQRQLFPLPKMITITHPDKPIWPVNSIQKDDYLLYLQNISPYILPFLR
DRLLTVIRFPHGSMGESFYQKNSPVTVPDFVTTKLVDDIRYIVCNDVESLLWLGNQLALE
FHIPFQTIKTNQPTEIVFDLDPPSVHEFSLAIEAALRMKAIFDQFGIQSFVKTSGGKGIQ
VYIPLPMNTFSYEDTRVFTKFVCNFLCEQEPQWFTTERLKKNRHNKLYLDYVQHDEGKTI
IAPYSPRGNEQGLIATPLYWNEVCNSLKPDLFSIPLVIERLKKQGNPFRNFQQGIEEQKF
ADVLQQLKELVKISHK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
ttgaagccaatgcttttaactgccgcaacggatattcccctaggaaaagaatgggtgtac
gaagctaaatatgatggttttcgttgcatattggactgggaggtagacgctactcccatt
cttaagagtagaaatgggaaagtgcttaatcagatgtttccagagattattagcttttgt
catgacaatcagaaaaaaatcagttcttctttaccattaacattagatggagagttagtg
tatttaacgaataattttcaaagtactttttccattgttcaattaagaggtcgaatgcgg
aatcaagatgtaatcatgaaacatgttaaagaatttccgtgtcattatattgtgtttgat
cttttgaaagttaaaggagaagttcaaacagatctttcaatcacaaaacgaaaacacaaa
ctacaaaaattttttcagaagataaagcttccaatttcaataagctatgaagacataaat
cggattcaagcaatagatgtttaccaagacaatgaagtgttgtggaagcatatcaaggta
agcaatggggaaggaatagtcgccaagcaaaaaaacagtagttggattagtgataaacgt
accgtccaatggttaaaaataaaaaactggcgatatgtcactgtcatcttaactaaatat
gataaaagcaatgggttttttcatggggctatttatcataagaaggctcttgttgagatt
gtgactttccgtcacggtcttaaagaagaagagttaaatacattaataatgctatttcaa
tcgagtggaactaagttagccgaaaaggtttgggcactagaaccatcaatttgcgtggag
attgcctgtattgatttcgatggaaagtatttaagggaaccaaggtttcatgcatttaat
tttgacaaggagccaagcgattgtcggtggcagcaaatgcaacgacagctttttccactt
ccaaaaatgataacaataacccaccctgacaagcctatatggccggtaaatagtatacaa
aaagatgattacttactgtacttacaaaatatatctccctatattctgccttttttacgt
gaccgccttcttacggttattcgttttccacacggttcaatgggtgaaagtttttatcaa
aaaaatagcccagttactgttcctgattttgtgacaactaaactggtagatgacatccgt
tatattgtctgtaatgacgttgaatctttactgtggcttggaaaccaacttgcgctagag
tttcacattccttttcaaacgattaaaacgaatcagccaactgaaattgtttttgacctt
gaccctccttcagttcatgagttttctttagccatagaggcggcattgcgaatgaaagct
atttttgaccaattcggaattcaatcttttgtgaaaacctctggtggaaaagggatacaa
gtttatattccattacctatgaacactttttcttatgaagacacccgggtatttacaaag
tttgtttgtaatttcttatgcgaacaggagccgcaatggtttaccacagagcgacttaaa
aagaatcgacataataaattatatttggactatgtccaacatgatgaagggaaaacgata
atagctccctattctccaagaggtaacgaacaagggctaatcgcgactccactatactgg
aatgaagtatgtaattcattgaaaccagatttattttccattcccttagttattgaaagg
ttaaagaaacaaggaaatccatttcgtaatttccaacaaggaatagaagaacagaagttt
gcagatgtcctacaacaactaaaagaactagtgaaaatctctcataaataa
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