KEGG   Pseudomonas anuradhapurensis: HU763_012465
Entry
HU763_012465      CDS       T07691                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
panh  Pseudomonas anuradhapurensis
Pathway
panh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:panh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HU763_012465 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:panh03400]
    HU763_012465 (ligD)
Enzymes [BR:panh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HU763_012465 (ligD)
DNA repair and recombination proteins [BR:panh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HU763_012465 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S IMS mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QXI50195
LinkDB
Position
complement(2676465..2678960)
AA seq 831 aa
MAKPLEEYARKRDFNATPEPSGKQKRTQRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAREA
YAKGKLRFRLQGEKLSGVWNLFRTHMAGKKEQWMLVKSHDSQARSESEYSIVDAQPDSVL
SDRTLLPKRSSGKPAKAKPAAGKRSATGKAAPLPELLQPQLATLVDSPPAGDWRYEVKFD
GYRILARIEGDDIRLFTRNGHDWSAKMPRQVAALRQLGVDSAWLDGEMVVNNEQGVADFQ
ALQNAFDTDHDEQITYYLFDLPFLGGRDLRQVPLQDRRDTLRQLLEANEADNLVFSADFD
QPVESLLDSACRLDLEGLIGKRVDSTYVGRRSADWIKLKCKKRQEFVIVGFTEPKGSRNG
FGALLLALHDNDSGELRYAGKVGTGFSATTLDSIHARLKPLEIAKPALAKPPGGAEARGV
HWLKPQLLAEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPGKTLPKSKPAKATE
HFGDLRLTHPERVIDASSGATKRDVAEYYAEVSQWILPQLKDRPVALVRAPDGLAGELFF
QKNAGQLHIPNVLSYDKAEAGQAAMIINRPDTLLGAVQMNMLELHTWNGTDKDFDKPDRF
VLDLDPDPALPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGIHVVVPLTRKASWDEVKD
FSHAIVNYLARLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAREGLPVSVP
IWREELTQLKGANQWNINNLRERLAEVDDPWADMGKVRQSITARMRKLLGQ
NT seq 2496 nt   +upstreamnt  +downstreamnt
atggccaagcccctcgaggaatacgcacgcaaacgcgatttcaacgccacgcccgaaccc
agtggcaagcagaagcgcacccagcgcgcccacgccctgcagttctgcatccagaagcac
gatgccagccacctgcattatgatttccgcctggaactggacggcacgctgaaaagctgg
gccatcccgaaaggcccatcgctcgaccccaaggtgcgccgcctggccgtgcacgtcgaa
gaccatccgctggactacgccgacttcgaaggccacatccccgaagggcattatggtgcc
ggcgatgtgattgtctgggatcgcggcatctgggagccggagggggacgcccgcgaggcc
tatgccaaaggcaagctgcgtttccgcctgcagggcgaaaagctcagcggggtatggaac
ctgttccgcacgcacatggccggcaagaaggagcagtggatgctggtcaagtcccacgac
agccaggcgcgcagcgaaagcgaatacagcatcgtcgacgcgcagccagatagcgtgctc
agcgaccgtaccctgctacccaagcgcagcagcggcaagccggccaaggccaagcctgcg
gccggcaaacgctcggccactggcaaggcagcgccgctgccagagctgttgcagccgcag
ctggccacgctggtcgactcgccaccggcgggtgactggcgctacgaagtgaagttcgac
ggctaccgcatcctggcgcgcatcgaaggcgatgacattcgcctgttcacccgcaacggc
catgactggagcgccaagatgccgcgccaggtggctgcgctgcgccagcttggggtcgat
tcggcctggctggatggcgagatggtagtgaacaacgagcaaggggtggcagacttccag
gcgctgcagaacgcattcgataccgatcacgacgaacagatcacctattacctgttcgac
ctgccctttctcggcggccgtgacctgcgccaggtgccgctgcaggaccgccgcgacacg
ctgcgccagctgctcgaagcgaatgaagccgacaacctggtgttttctgccgatttcgac
cagccggtggagtcgttgctggacagtgcctgccgcctggacctggagggcttgatcggc
aaacgcgtggacagcacctacgtcggccggcgtagtgctgactggatcaagctcaagtgc
aagaaacgccaggagttcgtgatcgtcggctttaccgagccgaaaggtagccgcaacggc
ttcggagcgctgctgctggcgctgcatgacaacgacagcggtgagttgcgctacgccggc
aaggtcggcaccggcttcagcgccaccacgctggacagcatccatgcgcggctcaaaccg
ctcgaaatcgccaagcccgccctggccaagccgcctggcggggccgaggcacgcggcgtg
cactggctgaagccacagttgctggcggaagtcgcctacgcgcagatgacccgcgaaggg
atcgtgcgccattcggtatttcacggcctgcgcgacgacaaacctgccaccgccattgac
ctggagcgtgccatgcccggcaagaccctgcccaaatccaagcccgccaaggccacggag
cacttcggtgacttgcgcctgacccaccccgagcgcgtcatcgacgccagcagcggcgcc
accaagcgcgacgtggcggaatattacgccgaggtcagccagtggatcctgccgcagctc
aaggaccgcccggtggccttggtgcgcgcccctgacgggttggcgggcgagctgttcttc
cagaaaaatgccggccagctgcacatccccaacgtgctcagctacgacaaagccgaggca
ggccaggcggcgatgatcatcaatcgccccgacaccttgctgggcgcggtgcagatgaac
atgctcgaactgcacacctggaacggcaccgacaaggatttcgacaagcccgaccgcttc
gtcctcgacctcgacccggaccccgccctgccctggaaagccatgctggaggctacccag
ctgaccctgaccctgctcgacgagctgggcctgaaggtgtttctgaagaccagcggcggc
aaaggtatccatgtggtcgtgccgctgacgcgcaaagccagttgggacgaggtgaaagac
ttcagccacgccatcgtcaattacctggccaggctgttcccggagcgcctgagcgccgtg
tccgggccgaaaaaccgcgtgggccgcatcttcatcgactacctgcgcaacggcaagggc
gccaccactgcctgcgcctattcgctgcgggcgcgcgaggggttgccggtttcggtaccg
atctggcgtgaagagctcacccagctcaagggcgccaaccaatggaacatcaacaacctg
cgcgaacgcctggcagaggtcgacgatccttgggcagacatgggcaaggtacgccagtcc
atcaccgcacggatgcgcaagctgctgggccagtaa

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