Pseudomonas anuradhapurensis: HU763_012465
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Entry
HU763_012465 CDS
T07691
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
panh
Pseudomonas anuradhapurensis
Pathway
panh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
panh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU763_012465 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
panh03400
]
HU763_012465 (ligD)
Enzymes [BR:
panh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU763_012465 (ligD)
DNA repair and recombination proteins [BR:
panh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU763_012465 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
IMS
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QXI50195
LinkDB
All DBs
Position
complement(2676465..2678960)
Genome browser
AA seq
831 aa
AA seq
DB search
MAKPLEEYARKRDFNATPEPSGKQKRTQRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAREA
YAKGKLRFRLQGEKLSGVWNLFRTHMAGKKEQWMLVKSHDSQARSESEYSIVDAQPDSVL
SDRTLLPKRSSGKPAKAKPAAGKRSATGKAAPLPELLQPQLATLVDSPPAGDWRYEVKFD
GYRILARIEGDDIRLFTRNGHDWSAKMPRQVAALRQLGVDSAWLDGEMVVNNEQGVADFQ
ALQNAFDTDHDEQITYYLFDLPFLGGRDLRQVPLQDRRDTLRQLLEANEADNLVFSADFD
QPVESLLDSACRLDLEGLIGKRVDSTYVGRRSADWIKLKCKKRQEFVIVGFTEPKGSRNG
FGALLLALHDNDSGELRYAGKVGTGFSATTLDSIHARLKPLEIAKPALAKPPGGAEARGV
HWLKPQLLAEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPGKTLPKSKPAKATE
HFGDLRLTHPERVIDASSGATKRDVAEYYAEVSQWILPQLKDRPVALVRAPDGLAGELFF
QKNAGQLHIPNVLSYDKAEAGQAAMIINRPDTLLGAVQMNMLELHTWNGTDKDFDKPDRF
VLDLDPDPALPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGIHVVVPLTRKASWDEVKD
FSHAIVNYLARLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAREGLPVSVP
IWREELTQLKGANQWNINNLRERLAEVDDPWADMGKVRQSITARMRKLLGQ
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctcgaggaatacgcacgcaaacgcgatttcaacgccacgcccgaaccc
agtggcaagcagaagcgcacccagcgcgcccacgccctgcagttctgcatccagaagcac
gatgccagccacctgcattatgatttccgcctggaactggacggcacgctgaaaagctgg
gccatcccgaaaggcccatcgctcgaccccaaggtgcgccgcctggccgtgcacgtcgaa
gaccatccgctggactacgccgacttcgaaggccacatccccgaagggcattatggtgcc
ggcgatgtgattgtctgggatcgcggcatctgggagccggagggggacgcccgcgaggcc
tatgccaaaggcaagctgcgtttccgcctgcagggcgaaaagctcagcggggtatggaac
ctgttccgcacgcacatggccggcaagaaggagcagtggatgctggtcaagtcccacgac
agccaggcgcgcagcgaaagcgaatacagcatcgtcgacgcgcagccagatagcgtgctc
agcgaccgtaccctgctacccaagcgcagcagcggcaagccggccaaggccaagcctgcg
gccggcaaacgctcggccactggcaaggcagcgccgctgccagagctgttgcagccgcag
ctggccacgctggtcgactcgccaccggcgggtgactggcgctacgaagtgaagttcgac
ggctaccgcatcctggcgcgcatcgaaggcgatgacattcgcctgttcacccgcaacggc
catgactggagcgccaagatgccgcgccaggtggctgcgctgcgccagcttggggtcgat
tcggcctggctggatggcgagatggtagtgaacaacgagcaaggggtggcagacttccag
gcgctgcagaacgcattcgataccgatcacgacgaacagatcacctattacctgttcgac
ctgccctttctcggcggccgtgacctgcgccaggtgccgctgcaggaccgccgcgacacg
ctgcgccagctgctcgaagcgaatgaagccgacaacctggtgttttctgccgatttcgac
cagccggtggagtcgttgctggacagtgcctgccgcctggacctggagggcttgatcggc
aaacgcgtggacagcacctacgtcggccggcgtagtgctgactggatcaagctcaagtgc
aagaaacgccaggagttcgtgatcgtcggctttaccgagccgaaaggtagccgcaacggc
ttcggagcgctgctgctggcgctgcatgacaacgacagcggtgagttgcgctacgccggc
aaggtcggcaccggcttcagcgccaccacgctggacagcatccatgcgcggctcaaaccg
ctcgaaatcgccaagcccgccctggccaagccgcctggcggggccgaggcacgcggcgtg
cactggctgaagccacagttgctggcggaagtcgcctacgcgcagatgacccgcgaaggg
atcgtgcgccattcggtatttcacggcctgcgcgacgacaaacctgccaccgccattgac
ctggagcgtgccatgcccggcaagaccctgcccaaatccaagcccgccaaggccacggag
cacttcggtgacttgcgcctgacccaccccgagcgcgtcatcgacgccagcagcggcgcc
accaagcgcgacgtggcggaatattacgccgaggtcagccagtggatcctgccgcagctc
aaggaccgcccggtggccttggtgcgcgcccctgacgggttggcgggcgagctgttcttc
cagaaaaatgccggccagctgcacatccccaacgtgctcagctacgacaaagccgaggca
ggccaggcggcgatgatcatcaatcgccccgacaccttgctgggcgcggtgcagatgaac
atgctcgaactgcacacctggaacggcaccgacaaggatttcgacaagcccgaccgcttc
gtcctcgacctcgacccggaccccgccctgccctggaaagccatgctggaggctacccag
ctgaccctgaccctgctcgacgagctgggcctgaaggtgtttctgaagaccagcggcggc
aaaggtatccatgtggtcgtgccgctgacgcgcaaagccagttgggacgaggtgaaagac
ttcagccacgccatcgtcaattacctggccaggctgttcccggagcgcctgagcgccgtg
tccgggccgaaaaaccgcgtgggccgcatcttcatcgactacctgcgcaacggcaagggc
gccaccactgcctgcgcctattcgctgcgggcgcgcgaggggttgccggtttcggtaccg
atctggcgtgaagagctcacccagctcaagggcgccaaccaatggaacatcaacaacctg
cgcgaacgcctggcagaggtcgacgatccttgggcagacatgggcaaggtacgccagtcc
atcaccgcacggatgcgcaagctgctgggccagtaa
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