Pantoea anthophila: OJ965_05170
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Entry
OJ965_05170 CDS
T08866
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pano
Pantoea anthophila
Pathway
pano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJ965_05170 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pano03019
]
OJ965_05170 (rnr)
03016 Transfer RNA biogenesis [BR:
pano03016
]
OJ965_05170 (rnr)
Enzymes [BR:
pano01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OJ965_05170 (rnr)
Messenger RNA biogenesis [BR:
pano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OJ965_05170 (rnr)
Transfer RNA biogenesis [BR:
pano03016
]
Prokaryotic type
tRNA degradation factors
OJ965_05170 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
TFIIE_beta
YqfQ
Motif
Other DBs
NCBI-ProteinID:
UZH03524
LinkDB
All DBs
Position
540948..543440
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AA seq
830 aa
AA seq
DB search
MSKDPFQDREAEKYENPIPSREFILALLEKREKPASREELAEEMNLHDEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDLYLSAEQMKFCMH
GDVILAQPLGADRKGRREARVVRVQEPRNNQIVGRYFTDAGAGFVVPDDSRLSFDILIPP
EETMQARMGSVVVVELVQRPNRRSKAIGKVIEILGEDMGTSLAVDMALRTHEIPHTWPPQ
VEAQISQLKEEVPEEAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAHQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGKLTGFKHYEAVMNSHARLTYNKVWNILQGDKELRQQYAPLVKDLEELHNLYQALDAA
REERGGISFETEEAKFIFNAERRIERVERVSRNDAHKLIEECMILANIASARFVEKNQEP
ALFRDHDRPTDESIKSFRTVLNELGLSLPGGNKPQPVDYAALLKQVADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLTLHRAIKYLLAKEQDEGKGLVQRA
IKYLMPKDRSVAKDLTTATGGYHYDMPQMLQLGLHCSLTERRADEATRDVADWLKCDFMQ
DQVGNVFNGVISSVTGFGFFVRLNDLFIDGLVHVSSLDNDYYRFDPVGQRLIGESGGRTY
RLGDTVEVRVEAVHMDERKIDFALISSQRQVRGEGKTARDRAKRDDKAPAKRPRDASRKS
NFEPDAAFRGGKGKSAGANSEKKSKNVSEKTRKIAAATKAKRARRKAESD
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggatagagaagctgaaaaatacgaaaaccctattccaagc
cgtgaatttatcctggctttattagaaaaacgtgaaaaaccggccagccgtgaagagctg
gctgaagagatgaatctgcacgatgaagagcagcttgaggcgctgcgtcgccgccttcgc
gccatggagcgtgatggtcagctggtcttcacccgccgtcagtgttatgccctgccagag
cgcctcgatctcctgcgcggtaaagttatcggccatcgtgatggctacggcttcctgcgg
gcggaaggtcagaaagatgacctctatctttccgctgaacagatgaaattctgcatgcac
ggtgacgtgatcctggcgcagccactgggtgccgatcgcaaaggccgtcgcgaagcgcgc
gtggtccgggtgcaggaaccccgcaacaatcagatcgttggccgctactttaccgatgcc
ggtgccggcttcgtggtgccggatgacagtcgcctgagtttcgatattctcatcccgcca
gaagagacgatgcaggcccgtatgggttccgtggtggtggtagagctggtgcagcgcccg
aaccgccgcagcaaagcgatcggtaaagtgattgaaatcctcggcgaagatatgggcacc
agcctggccgtggatatggcgctgcgcacccatgaaattccgcacacctggccgccgcag
gtagaagcccagatcagccagctgaaagaagaggtgccggaagaggcgaaaaaaggccgc
gtcgatctgcgcaaactgccgctggtcaccattgatggtgaagatgcccgtgacttcgat
gatgccgtctactgtgagaaaaagcgcggcggtggctggcgtctgtgggtcgcgattgcc
gatgtgagctactacgttcgtccgggcacgccgctggatgatgaggcgcatcagcgcggc
acctcggtctacttcccgtcacaggtggtgccgatgctgccggaagtgctgtcgaatggc
ctctgttcgcttaacccgcaggtggatcgcctgtgtatggtgtgcgagatgaccatttcg
accaagggtaaactgaccggcttcaaacattatgaagcggtgatgaactcccatgcgcgt
ctgacctataacaaggtctggaatatcctgcagggcgacaaagagctgcgtcagcagtac
gcgccgctggttaaagatcttgaagagctgcataacctctatcaggcgctggatgctgcc
cgcgaagagcgcggcggtatctcgtttgagacggaagaggcgaagtttattttcaacgcc
gagcgccgtattgagcgggtggaacgcgtctcccgtaatgacgcccacaagctgatcgaa
gagtgcatgatcctggcgaacatcgcctcggcacgctttgtggagaaaaatcaggaaccg
gcgctgttccgcgaccacgatcgtccgaccgacgagagcatcaagagcttccgtaccgtg
ctcaatgagctgggactgagcctgccaggcggcaacaaaccgcagcctgttgactatgcg
gcgctgctgaagcaggtggccgatcgtccggatgcggaaatgctgcagaccatgctgctg
cgttccatgaagcaggcggtgtacgatccggagaaccgcggccacttcggtctggccctc
tcctcctatgctcactttacctcgccgatccgtcgctacccggatctgacgctgcaccgc
gccatcaaatatctgctggcaaaagagcaggatgaaggcaaagggctggttcagcgcgcc
attaagtacctgatgccgaaagatcgcagcgtcgccaaagatctgacgaccgcgaccggt
ggctatcactatgacatgccgcagatgctgcaactgggcctgcactgctccctgaccgag
cgccgcgcagatgaagcgacgcgcgacgtggcggactggctcaagtgtgacttcatgcag
gatcaggtcggtaacgtgttcaacggcgtcatctccagcgtcaccggatttggcttcttt
gtgcgcttaaacgatctcttcattgatggtctggtgcatgtctcctcactcgacaatgac
tactaccgttttgacccggtgggtcagcgtctgattggtgaatcgggcgggcgcacctat
cgcctgggtgacaccgtggaagtgcgggtggaagccgtgcatatggacgagcgtaaaatc
gactttgccctgatctccagtcagcggcaggtgcgtggcgaaggaaaaaccgcgcgcgac
cgcgcaaaacgtgacgataaagcgccagcgaagcgccctcgcgatgcgagccgtaagtct
aacttcgagccggacgccgccttccggggaggcaaaggcaaatctgccggggcaaatagc
gagaaaaaaagtaaaaacgtctcggaaaaaacccgtaaaatcgccgccgccacaaaggcg
aagcgcgccagaagaaaggccgagtctgactga
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