Pantoea anthophila: OJ965_19780
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Entry
OJ965_19780 CDS
T08866
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pano
Pantoea anthophila
Pathway
pano03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OJ965_19780 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pano03021
]
OJ965_19780 (rpoC)
03400 DNA repair and recombination proteins [BR:
pano03400
]
OJ965_19780 (rpoC)
Enzymes [BR:
pano01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OJ965_19780 (rpoC)
Transcription machinery [BR:
pano03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OJ965_19780 (rpoC)
DNA repair and recombination proteins [BR:
pano03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OJ965_19780 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UZH02880
LinkDB
All DBs
Position
complement(3709194..3713417)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLDQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEHEKNEQDEWVAKTSLIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGEEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGSADILVPRNTLLDEHWCDVLELNSVDSLKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGSTMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTSGGKDLRPALKI
VDASGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIVSAGSTDFLEGEQAEFSRIKISNRDLEANGKVGATFVRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAAGEVPA
APQVTADEASASLAELLNAGLGGSKDD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgcgctggcttcgccagacatgatccgttcctggtcttttggtgaagtgaaaaag
ccagaaaccattaactaccgtacttttaagccagagcgcgatggtctgttctgtgcccgt
atcttcgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgtctgaaacac
cgtggtgtgatttgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcgtcgccgactgcgcacatctggttcctgaagtcactg
ccatcgcgtatcggcttgctgctggatatgccactgcgtgacatcgagcgcgtgctctac
tttgaatcttacgtggtaatcgaaggtggcatgaccaacctcgagaagcgtcagatcctg
actgaagagcagtaccttgacgcactggaagagttcggtgacgagttcgacgccaaaatg
ggcgccgaagcgatccaggccctgttgaaaaacatggatctggaccaggagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactctgaaaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gtgctgcctgttctgccaccggatctgcgtccgctggttccgctggatggcggacgtttt
gctacgtcagatctgaacgatctttatcgtcgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctggctgcgccagatatcatcgtgcgcaacgaaaagcgtatgctgcag
gaagcagtcgatgcactgctggataacggtcgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactccggtcgttcggttatcaccgtgggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactcgaactgttcaaaccgttt
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagcggttgtctgggatatcctcgacgaagtgatccgtgagcacccg
gttctgctgaaccgtgcgcctacgctgcaccgtctgggtattcaggcctttgaaccggtt
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcgtataacgccgac
ttcgatggtgaccagatggctgttcacgttccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtactgactggtccgaaagaagctgagcgtatttatcgcgctggc
ctggcctcactgcacgctcgcgttaaggtgcgtatcaccgaacacgagaaaaatgagcag
gatgagtgggtcgctaaaaccagcctgatcgacaccacgattggccgtgccattctgtgg
atgatcgtgccgaaaggtctgccttactccatcgtgaaccaggcgctgggtaaaaaagcg
atctccaaaatgctgaacacctgttaccgcattctggggctgaagccgaccgttatcttt
gctgaccagaccatgtacaccggtttcgcctacgcagcccgttcaggcgcgtcagtcggt
atcgacgacatggttattccagagaagaaagtggaaatcatcaccgaagcggaagcggaa
gtggctgagatccaggaacagttccagtctggtctggttaccgcgggtgaacgttataac
aaagtcatcgatatctgggccgcagccaacgaacgtgttgccaaggcgatgatggaaaac
ctctctaccgaaaccgtgattaaccgtgacggcgaagaagagaaacaggtttcctttaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccagatggctccatcatcgagacgccgattacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcaacccacggtgcgcgt
aaaggtcttgcggatactgcactgaaaaccgcgaactccggttatctgacgcgtcgtctg
gttgacgttgcccaggatctggttgtgaccgaagatgactgtggaacgcacgaaggcatc
atgatgaccccggtcatcgaaggtggcgacgtgaaagagccactgcgcgaacgcgttctg
ggtcgtgtgactgcggaagacgttctgaagccgggctcggctgacattctggttccacgt
aacaccctgctcgatgagcactggtgtgacgtgctggaactgaactcagtcgacagcctg
aaagtgcgttcggtcgtaggttgtgaaactgactttggtgtgtgtgcgcattgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcacgtgcggctgctgaatccagcattcaggtgaagaacaaaggtaccatcaagctg
accaacgccaagtcggtaacgaactcggcaggtaagctggtgatcacctcgcgtaacgtc
gaactgaaaatgatcgatgaatttggtcgtaccaaagagagctataaagttccttacggt
tctaccatggcgaaaggtgatggtgagcaggttgcagcgggcgaaaccgtagcaaactgg
gatccgcataccatgccagttatcaccgaagtaggcggtttcattcgcttcaccgacatg
attgacggccagaccattacccgtcagacagatgacctgaccggtctttcttcgctggtg
gtgctggacagtgctgaacgtacgtcaggcggtaaagatctgcgtcctgcgctgaaaatt
gttgatgccagcggcaacgacgttctgatcccaggcactgatatgcctgctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgttaagatcagtgccggtgacacg
ctggcgcgtgttccgcaggaatctggcggtaccaaggatattaccggtggtctgccacgc
gttgctgacctgttcgaagcgcgtcgtccgaaagagccggctatcctggctgagatcagc
ggtatcatctccttcggtaaagagaccaaaggtaaacgtcgtctggtcatcacgccgctg
gatggcagtgagccatacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggcgaacgtgttgagcgcggtgacgtggtttccgatggcccagagtctccacatgacatc
ctgcgcttgcgtggtgtgcatgcggtgacccgttacatcactaacgaagtgcaggaagtt
tatcgtctgcagggcgttaagattaacgataagcacatcgaagtcatcgttcgtcagatg
ctgcgtaaagcgaccatcgtgagcgcaggaagcaccgacttcctggaaggtgagcaggct
gaattctctcgcatcaagatctctaaccgtgatctggaagcgaacggaaaagttggcgca
accttcgtacgtgacctgctgggtattaccaaagcgtcactggcaaccgaatcgttcatc
tctgccgcatcgttccaggaaacgacccgtgtcctgaccgaagcagcagtagcaggcaag
cgtgatgaactgcgcggcctgaaagagaacgtcatcgtgggtcgtctgatcccggccggt
accggttatgcataccatcaggatcgtatgcgccgtaaagcggcgggtgaagttccggct
gcaccgcaggtgactgcggatgaagcctcagccagtctggctgaactgctgaacgccggc
ctaggcggcagcaaagacgattaa
DBGET
integrated database retrieval system
