KEGG   Pseudomonas antarctica: A7J50_5358
Entry
A7J50_5358        CDS       T04830                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
panr  Pseudomonas antarctica
Pathway
panr02020  Two-component system
Brite
KEGG Orthology (KO) [BR:panr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    A7J50_5358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:panr03021]
    A7J50_5358
Transcription machinery [BR:panr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     A7J50_5358
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 HTH_23 HTH_24 Sigma70_r2 Rv2175c_wHTH Sigma70_ECF HTH_Tnp_ISL3 Sigma70_r3 HTH_29 HTH_28 HTH_17 HTH_31 PF0610-like_N CENP-B_N HTH_38 MerR
Other DBs
NCBI-ProteinID: ANF88692
UniProt: A0A172Z8I4
LinkDB
Position
5894234..5894623
AA seq 129 aa
MRLLGRDELREPREPRAFLVSIAKGLLFDYFRRAALEQAYLNELMLLPESEQPSPEEQQL
ILEDLKAIDQLLAKMSSKARAAFLYNRLDGMSHAEIARRLDVSVPRVRQYLAQGIRQCYV
ALYGEPSCP
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcgcctgctgggccgtgatgagttgcgcgaaccgcgcgagccacgggcgtttctggtg
tcgatcgccaaaggcctgctgttcgactacttccgccgcgcagcactggaacaggcttac
ctcaacgaactgatgctgctcccggaaagcgaacagccgtcgcccgaagaacagcaattg
atcctcgaagacctcaaggccatcgaccaactgctcgccaagatgtcgagcaaggcccgc
gccgccttcctctataaccgcctcgacggcatgagccacgcagaaatcgcccggcgtctc
gacgtgtcggtgccccgcgtgcgtcagtacctggcccagggcattcgccagtgctacgtc
gcgctgtatggcgagccgtcgtgcccgtga

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