Papio anubis (olive baboon): 101025274
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Entry
101025274 CDS
T07474
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
panu
Papio anubis (olive baboon)
Pathway
panu03013
Nucleocytoplasmic transport
panu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
panu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101025274 (UPF1)
03015 mRNA surveillance pathway
101025274 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panu03019
]
101025274 (UPF1)
Enzymes [BR:
panu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101025274 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101025274 (UPF1)
Messenger RNA biogenesis [BR:
panu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101025274 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101025274 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101025274
NCBI-ProteinID:
XP_003915257
Ensembl:
ENSPANG00000008847
LinkDB
All DBs
Position
20:complement(33209319..33247515)
Genome browser
AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGD
EICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF
DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK
TVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK
VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR
TAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILV
GDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGS
LQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYF
QTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGR
QKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQD
SYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctctcagactctcactttcctggacacggaggag
gccgagctgctcggcgccgatacacagggctccgagttcgagttcaccgactttactctt
cctagccagacgcagacgccccccggcggccccggcggcccgggcggtggcggcgcggga
ggcccaggcggcgcgggcgcgggcgccgcggcgggacaactcgacgcgcaggttgggccc
gaaggcatcctgcagaatggggctgtggacgacagtgtagccaagaccagccagttgttg
gccgagttgaacttcgaggaagatgaagaagacacctattacacgaaggatctccccata
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc
aagaagtggttctgcaacggacgtggaaatacttctggcagccatattgtaaatcacctt
gtgagggcaaaatgcaaagaggtgaccctgcacaaggacgggcccctgggggagacagtc
ctggagtgctacaactgcggctgtcgcaatgtcttcctccttggcttcatcccagccaaa
gctgactcggtggtggtgctgctgtgcaggcagccctgtgccagccagagcagcctcaag
gacatcaactgggacagctcacagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctccgagcaggagcagctgcgggcgcgccagatcacggcacag
cagatcaacaagctggaggagctatggaaggaaaacccttctgccacgctggaggacctg
gagaagccgggggtggacgaggaaccgcagcacgtcctcctgcggtatgaggacgcctac
cagtaccagaacatattcgggcccctggtcaagctggaggccgactacgacaagaagctg
aaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctgacatgcggctcatgcagggggat
gagatatgcctgcggtacaaaggggaccttgcgcccctgtggaaagggatcggccacgtc
atcaaggtccctgataattatggcgatgagattgccattgagctgcggagcagcgtgggt
gcacccgtggaggtgactcacaacttccaggtggattttgtgtggaagtcgacctccttt
gacaggatgcagagtgcattgaaaacgtttgctgtggacgagacctcagtgtccggctac
atctaccacaagctgctgggccacgaggtggaggacgtaatcatcaagtgccagctgccc
aagcgcttcacggcgcagggcctccccgacctcaaccactcccaggtttatgccgtgaag
actgtgctgcaaagaccgctgagcctgatccagggcccgccaggcacggggaagacagtg
acgtcggccaccatcgtctaccacctggcccggcaaggcaacgggccggtgctggtgtgt
gctccgagcaacatcgccgtggaccagctaacagagaagatccaccagacggggctgaag
gtcgtgcgcctctgtgccaagagccgcgaggccatcgactccccagtgtctttcctggcc
ctgcacaaccagatcagaaacatggacagcatgcctgagctgcagaagctgcagcagctg
aaagatgagactggggagctgtcgtctgccgacgagaagcggtaccgggccttgaagcgt
accgcagagagagagctgctgatgaatgcagatgtcatctgctgcacatgtgtgggcgcc
ggcgacccaagactggccaagatgcagttccgctccattttaatcgacgaaagcacccag
gccactgagccagagtgcatggttcccgtggtccttggggccaagcagctgatccttgta
ggtgaccactgccaactgggcccagtggtgatgtgcaagaaggcggccaaagccgggctg
tcgcagtcgctcttcgagcgcctggtggtgctgggcatccggcccatccgcctgcaggtc
cagtaccggatgcaccctgcactcagcgccttcccgtccaacatcttctacgagggctcc
ctccagaatggtgtcactgcagcggatcgtgtgaagaagggatttgacttccagtggcct
cagcccgataaaccgatgttcttctacgtgacccagggccaagaggagatagccagctcg
ggcacctcctacctgaacaggaccgaggctgcgaacgtggagaagatcaccacgaagttg
ctgaaggcgggcgccaagccggaccagattggcatcatcacgccctacgagggccagcgc
tcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggag
gtggagatcgccagtgtggacgcctttcagggacgcgagaaggacttcattatcctgtcc
tgtgtgcgggccaacgagcaccaaggcattgggtttttaaatgaccccaggcgtctgaat
gtggccctgaccagagcaaggtacggcgtcatcattgtgggcaacccgaaggcgctgtcg
aagcagccactctggaaccacctgctgaactactataaggagcagaaggtgctggtggag
gggccgctcaacaacctgcgcgagagcctcatgcagttcagcaagccgcgcaagctggtc
aacaccatcaacccgggagcccgcttcatgaccacagccatgtatgatgcccgggaggcc
atcatcccaggctccgtctatgatcggagcagccagggccggccctccagcatgtacttc
cagacccatgaccagattggcatgatcagtgccggccccagccacgtggctgccatgaac
attcccatccccttcaacctggtcatgccgcccatgccaccgcctggctattttggacaa
gccaacgggcccgctgcaggccgaggcaccccgaaaggcaagactggccgtgggggacgc
cagaagaaccgctttgggcttcctgggcccagccagaccaacctccccaacagccaagcc
agccaggatgtggcgtcacagcccttctctcagggtgccctgacgcagggctacatctcc
atgagccagccctcccagatgagccagcccggcctctcccagccggagctgtcccaggac
agttaccttggtgatgagtttaaatcacaaatcgacgtggcgctctcgcaggactccacg
taccagggagagagggcgtaccagcatggcggggtgacggggctgtcccagtactaa
DBGET
integrated database retrieval system
