Phreatobacter aquaticus: E8L99_17280
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Entry
E8L99_17280 CDS
T09827
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paqt
Phreatobacter aquaticus
Pathway
paqt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paqt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E8L99_17280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paqt03400
]
E8L99_17280 (mfd)
Enzymes [BR:
paqt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E8L99_17280 (mfd)
DNA repair and recombination proteins [BR:
paqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E8L99_17280 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCK87382
UniProt:
A0A4D7QTQ8
LinkDB
All DBs
Position
3642157..3645675
Genome browser
AA seq
1172 aa
AA seq
DB search
MAKRSPADVVASRGRLTLGGVPQGFDALVIADLARQLHAKGNQASPELVVVCRDGPRMQA
LEAALGFFAPSIEILTFPAWDCQPYDRASPNGALMARRMLTLSRLARVTGRATPAIVLTT
INAALQRVPARAFVGAQSLSAAPGNVLSMAQLGSWLEVNGYLRTSTVRDVGEYAVRGGIL
DLHPPGLELPIRLDFFGDTLGSIRTFDPESQRTSGSLRRLDLVPTSEVQITTETMVKFRL
AYVRAFGGSTKGDQLYEAVSEGRRHPGVEHWLPLFTDRLDTIFDYLPGSGVVLENQVEEA
AKERLTTVADHYDARKSALDHDPAHTSYKPLPPDLLYLTEKEWDAVRGAESVVKLSPFAL
AGASSGQMIDLEGRRGRSFAAERADENANVFDAVVAHVAELRKEKKRVILAAWSDGSRER
LSQILADHDLKNLKTVESWTVAQALRGDEIALAVLGIEEGFETPDIAIIGEQDILGDRLV
RTQKKRKRAQDFILEATSLSAGDLVVHVDHGIGRFIGLKTVTAVGAPHDCVEIHYAGGDK
LFLPVENIELLSRYGSEDTEAQLDRLGGGSWQARKARMKKRILEMAAGLIKIAAARALRE
APKLVAPDGAYDEFAARFPYDETEDQLFAIEAVLEDLGAGKPMDRLVCGDVGFGKTEVAL
RAAFAAVMSGKQVAVVVPTTLLARQHFKTFTERFKGLPINVAQASRMVGSADLAAAKKGL
TEGTVDIVVGTHALLGKAIEFKDLGLVIVDEEQHFGVGHKERLKQLRAEVHVLTLTATPI
PRTLQLAMTGVRDLSIIATPPVDRLAVRSFVTPFDPLIIREALLRERYRGGQAFFVCPRI
EDLGEVEAFLRDHVPEAKFIVAHGQMTPTELEDRIGAFYDGKVDILVSTTIVESGLDIPS
ANTLIVWRADMFGLAQLYQLRGRVGRSKTRAYALFTLPENKPVTPQAERRLKVLQSLDTL
GAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEEAVALMKQGFVEDTVADKW
SPQITVGTPILIPETYVEDLTLRLQLYRRLGDLETDEEIDSFAAEMIDRFGPLPPEVEHL
VKVAVIKAYCRRANVDKVDSGPRGIVMSFRDGKFANPAGLVRYIGEQGSLAKVRPDQKIV
FIRDWSRAEDRLKGTTVILRNLVKIAETKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacgttcgcctgccgatgtcgtcgcctcgcgcggccgcctgacccttggcggc
gtgccgcagggcttcgatgcgctcgtcatcgccgatctcgcccgccagctccacgccaag
ggcaaccaggcttcgcccgaactggtggtggtctgccgcgacggcccgcgcatgcaggcg
ctggaggcagccctcggcttcttcgcgccctcgatcgagatcctgacgttcccggcctgg
gactgccagccctatgaccgcgcctcgccgaacggcgcgctgatggccaggcgcatgctg
accttgtcgaggcttgcccgcgtcaccggacgcgccacgccggcgatcgtgctgaccacc
atcaatgccgcgctccagcgcgtgccggcccgcgcctttgtcggcgcgcaatcgctgtcg
gctgcccccggcaatgtgctctccatggcgcagctcgggtcctggctcgaggtcaacggc
tatctccgcacctccaccgtccgcgatgtcggcgaatatgcggtgcgcggcggcattcta
gacctgcatccgccgggcctggagctgccgatccggctcgatttcttcggcgacacgctg
ggatcgatccgcaccttcgatcccgagagccagcgcacctccgggagcctgcgtcggctc
gacctcgtgccgacctcggaagtgcagatcaccaccgagaccatggtgaagttccgcctg
gcctatgtccgtgccttcggtggctcgaccaagggcgatcagctctatgaggccgtctcg
gagggccgccgccatccgggcgtcgagcactggctgccgctgttcaccgaccggctcgat
acgatcttcgactatctgccgggctccggcgtggtgctggaaaaccaggtggaggaggcc
gccaaggagcggctcaccaccgttgccgaccattacgatgcgcgaaagtcggcgctcgac
cacgatcccgcccacacctcctacaagccgctgccgccggacctgctctatctgacggag
aaggaatgggacgccgtccgcggcgcggaatccgtcgtcaagctgtcgcccttcgcgctg
gcaggcgcgtcttcaggccagatgatcgatctggagggccggcgcgggcgctcgtttgcc
gccgaacgcgccgacgagaacgccaatgtcttcgacgccgtggtcgcccatgtcgccgag
ctccggaaggagaagaagcgggttatcctcgccgcgtggtccgacgggtcgcgcgagcgc
ctgtcgcagatcctggccgaccacgacctgaagaacctgaagaccgtcgagagctggacg
gttgcccaggctttgcgcggcgacgagatcgcgctcgccgtcctcggcatcgaggagggt
ttcgagacgcccgacatcgccatcatcggcgagcaggacattctcggcgaccgcctcgtc
aggacccagaagaagcgcaagcgcgcgcaggatttcatcctcgaggcgaccagcctctcg
gccggcgacctcgtcgtccatgtcgatcacggcatcggccggttcatcgggctgaagacg
gtgaccgccgtcggcgcgccgcatgattgcgtcgagatccactatgccggcggcgacaag
ctgttcctgccggtggagaatattgagctcctgtcgcgctatggctcggaggataccgag
gcccagctcgaccggctcggcggcggctcctggcaggcgcgcaaggcgcggatgaagaag
cgcatcctcgagatggcggccggtctcatcaagatcgccgcggctcgggcgctgcgcgaa
gcaccgaagctcgtcgcgcccgacggcgcctatgacgaattcgcggcgcgcttcccctat
gacgagaccgaggaccagctcttcgccatcgaggcggtgctggaggatctgggcgccggc
aagccgatggaccgcctggtctgcggcgatgtcggcttcggcaagaccgaagtggcgctg
cgcgcggccttcgctgcggtcatgagcggcaagcaggtggcggtcgtggttcccaccacg
ctgcttgcccgccagcacttcaagaccttcaccgagcgcttcaagggcttgccgatcaat
gtggcgcaggcgtcccgcatggtcggctcggccgatctcgcggccgccaagaagggcctc
accgagggcacggtcgacatcgtcgtcggcacccatgcgctgctcggcaaggcgatcgag
ttcaaggatctcggcctcgtcatcgtcgacgaggagcagcatttcggcgtcggccacaag
gagcgcctcaagcagctgcgcgccgaggtccatgtcctgacgctgaccgcaaccccgatc
ccgcggaccctgcagctcgccatgaccggcgtgcgcgatctctcgatcatcgcgacgccg
ccggtcgaccggctggctgtgcgctccttcgtgacgcccttcgacccgctgatcatccgg
gaggcgctgctgcgcgaacgctatcgcggcggccaggcgttcttcgtctgcccgcgcatc
gaggatctcggcgaggtcgaggccttcctgcgcgaccatgtgccggaggcgaagttcatc
gtcgcccatggccagatgacgccgacggaactcgaggaccgcattggtgccttctatgac
ggcaaggtcgacatcctcgtctccacgacgatcgtcgagtccgggttggacatcccctcg
gccaacacgctgatcgtctggcgcgccgacatgttcgggcttgcccagctctaccagctg
cgcggccgcgtcggccgctccaagacccgcgcctatgccctgttcacgctgccggagaac
aagccggtgacgccgcaggccgaacgccgcctgaaggttctgcaatcgctcgacacgctg
ggtgcaggcttccagctcgcctcccacgatctcgacatccgcggcgccggcaacctgctc
ggcgacgagcagtcgggccatatcaaggaggtcggctacgagctctaccagcagatgctt
gaagaggcggtcgccctgatgaagcagggcttcgttgaggacacggtggccgacaagtgg
tcgccgcagatcacggtcggcacgccgatcctgatcccggagacctatgtcgaggacctg
acgctccggctgcaactctatcgccgcctcggcgatcttgagaccgacgaggagatcgat
tccttcgccgccgagatgatcgaccggttcggcccgctgccgccggaagtcgagcatctg
gtcaaggtcgcggtcatcaaggcctattgccgcagagccaatgtcgacaaggtcgattcc
ggtccgcgcggcatcgtcatgtcgttccgcgacggcaagttcgccaatccggccggcctc
gtccgctatatcggcgagcaggggtcgctcgcgaaggtgcgccccgaccagaagatcgtc
ttcatccgcgactggtcgcgcgccgaggaccggctgaagggcacaaccgtgatcctgcgc
aatctcgtcaagatcgccgagacgaagaaggcggcgtga
DBGET
integrated database retrieval system
