Paraburkholderia sp. SOS3: BTO02_12435
Help
Entry
BTO02_12435 CDS
T04966
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
para
Paraburkholderia sp. SOS3
Pathway
para03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
para00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BTO02_12435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
para03400
]
BTO02_12435
Enzymes [BR:
para01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BTO02_12435
DNA repair and recombination proteins [BR:
para03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BTO02_12435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APR36085
UniProt:
A0A1L6HXS1
LinkDB
All DBs
Position
1:complement(2781330..2784230)
Genome browser
AA seq
966 aa
AA seq
DB search
MADKLETYHRKRRFDETPEPSGADAPRKAAGRGAARKATHALAFVIQEHDARRLHYDFRL
ELDGTLKSWAIPKGPSLDPSVKRLAVHVEDHPLDYGSFEGTIPEGHYGAGDVIVWDRGTW
EPVGGEREALAAYAAGKLKFQLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDREAHSE
SEFDVLGAYPGSVLSDAPGAQGGHGASKGERAARPQTKPQSTGRAPARTARTSTGTSAAR
RSEHPDIVATRNSESLRELAQTPAIEGAKKAALPAAMKPELATLVETPPAGDTWTYEIKF
DGYRVLARIDQRNEKDPVRIFTRAGNDWTERFGKQAQALAKIGVETAWLDGEAVVLDEHG
VPSFQALQNAFDTHRERDITLYLFDLPYLNGYDLRNVPLEQRRALLRALLESLDDDALRY
SADFGTDAEALIRSACEMSLEGIIGKRRDSRYTSGRSSAWIKLKCRRRQEFVIGGYTEPG
GSRSDFGALLLGVYDEGGKLRYAGRVGTGFDAKRLRAVKKELDARETTKMPFASVPSERS
RTPVHWVKPELVAECNFAELTDEGIVRQASFVSLRSDKPARQIVIEAPRQGADVQQTSED
ESAASRAAPRTKARAAKARTATHDGDGTAATKRAGKASSSRKTAQAEGGDTRAATAASRG
TSKARGAATQTVAGVRISHPDRVIDKHTDTRKIDLVRYYESVADWMLPHLRDRPVSLVRA
PEDIGGELFFQKHAEKLSIPNITQHPGLDPGHPSLITIDSAKALVGAAQMGTIELHTWNA
VASNIEKPDRVVFDLDPDPALGWERMIEAAQLTHTLLAELGLVSFCKTSGGKGLHVVVPL
TKHEGWDDVKAFSQAVAQHMASTLPKNFAAKMGAQNRKGKIFVDYLRNNRGSSTVAAYSA
RARPGLGVSVPLSWDEVPDTTAGDQWNIANLHERLQSLREDPWADYAKTRQRITAAMRKR
LAGERG
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaactggaaacctatcaccgcaaacgacgcttcgatgaaacgcccgagccg
tccggggcggatgcgccgcgcaaggccgccggccgaggcgcagcgcgcaaagcgacgcat
gcgctcgccttcgtcattcaggagcacgatgcacggcgtctgcactacgacttccggctc
gagctcgacggcaccctgaaatcgtgggcgataccgaaagggccgagcctcgacccgtcg
gtgaagcggctcgccgtgcacgtcgaagaccatccgctcgactatgggtcgttcgagggc
acgattccggaaggccactatggcgcaggcgacgttatcgtttgggaccgtggcacgtgg
gaaccggtcggcggcgagcgcgaggcgctcgccgcatacgcggccggcaagctcaagttc
cagttgcacggcgagaagctgcacggcggctggacgctcgtgcgcagccatatgcgcggc
agcggcgacaaggagcagtggctgctgatcaaggagcgcgaccgcgaagcccatagcgag
agcgaattcgatgtgctcggcgcgtatcctggcagtgtgttgtccgatgcgccgggcgcg
cagggcgggcacggtgcgagcaagggcgagcgcgccgccaggccgcagaccaagccgcaa
tcgactggccgcgcgcccgctcgcacggctcgtaccagcactggcaccagcgcggccagg
cgcagcgagcaccccgacatcgtcgcgacgcgcaacagcgagtcgctgcgcgagctcgcg
caaacgcctgcgatcgaaggagcgaaaaaggccgcgctgcctgccgcgatgaagccggag
ctcgctacgctcgtcgaaaccccgcccgccggcgacacatggacctacgagatcaagttc
gacggctaccgcgtgctcgcgcgcatcgatcagcgcaacgagaaagatccggtgcgcatt
ttcacgcgcgcgggcaacgactggaccgaaaggttcggcaaacaggcgcaagcgctcgcg
aagatcggagtcgagaccgcatggctggacggcgaagccgtggtgctcgacgagcatggc
gtaccgagctttcaggcgctgcaaaacgcgttcgatacgcatcgcgaacgcgacatcacg
ctgtatctgttcgacctgccgtatctgaacggctacgacctgcgcaacgtaccgctcgaa
cagcgccgcgcattgctacgcgcgctgctcgaatcgctcgacgacgacgcgttgcgctat
tcggccgacttcggcactgacgctgaggccttgatcagaagcgcgtgcgagatgtcgctc
gaaggcatcatcggcaagcggcgcgacagccgttatacgtcgggccgttcgtcggcatgg
atcaagctcaaatgccggcggcgccaggaattcgtgatcggcggttatacggaaccgggc
ggcagccggtcggacttcggcgcgctgctgcttggcgtctacgacgaagggggcaagctg
cgctatgcaggccgcgtcggcacgggcttcgatgcgaagcggctgcgtgccgtaaaaaaa
gagctcgacgcgcgcgaaacgacgaagatgcctttcgcgagcgtacccagcgaacgcagt
cgcacacccgtgcactgggtcaagcccgagctcgtcgccgaatgcaatttcgccgaattg
accgatgaaggcatcgtccgccaggcgtcgtttgtcagcctgcgcagcgataaacccgcg
cggcagatcgtcatcgaagcgccgcgccaaggagctgacgtgcaacagacgagtgaagac
gaaagcgcagcctcgcgggccgcgccgcgtacgaaggcacgcgcggcgaaagcgcggacc
gcgacgcatgacggcgacggcacggcggcaaccaaacgcgcaggtaaggcgtcttcgtcg
cgcaagacggcgcaagccgaaggcggcgacacgcgcgcggcaacggctgcgtcgcgcggc
acatcgaaagcgcggggcgccgcgacgcagacggtcgcgggcgtgcggatctcgcatccg
gaccgcgtgatcgacaagcacacggacacacgcaagatcgatctcgtgcgctattacgag
tcagtggccgactggatgctgccgcatctgcgcgatcgcccggtgtcgctcgtacgcgcg
cccgaggatatcggcggcgagctgtttttccagaagcatgccgaaaagctgtcgatcccg
aacatcacgcagcatccggggctcgatcccggccatccgtcgctgatcacgatcgacagc
gcgaaagcgctcgtcggcgcggcgcagatgggcacgatcgagttgcacacgtggaatgcg
gtggcctcgaacatcgagaaacccgaccgcgtcgtgttcgatctcgaccccgatcctgcg
ctcggctgggagcggatgatcgaagcggcgcaactgacgcatacgctgctcgccgaactc
ggactcgtatcgttctgcaagacgagcggcggcaagggcctgcatgtcgtggtgccgctg
acgaaacacgagggctgggacgacgtaaaggcgttttctcaggccgtcgcgcagcacatg
gcgagcacgctgccgaagaacttcgccgcgaagatgggcgcgcaaaaccgcaagggcaag
atattcgtcgactacctgcgcaacaaccgcggctcgagcacggtcgcagcctattcggcg
cgcgcgcggccgggtctcggcgtctcggtgccgctcagttgggacgaagtgccggacacc
acggccggcgaccagtggaacatcgcgaatctgcacgagcgcctgcagtcgctgcgcgag
gatccgtgggccgactatgcgaagacgcggcagcgcatcacggcggcgatgagaaaacgc
ctcgcgggcgaacgcgggtag
DBGET
integrated database retrieval system