Paraburkholderia aromaticivorans: CJU94_15880
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Entry
CJU94_15880 CDS
T05169
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
parb
Paraburkholderia aromaticivorans
Pathway
parb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
parb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CJU94_15880 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parb03400
]
CJU94_15880 (ligD)
Enzymes [BR:
parb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CJU94_15880 (ligD)
DNA repair and recombination proteins [BR:
parb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CJU94_15880 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASV99494
UniProt:
A0A248VKX1
LinkDB
All DBs
Position
1:complement(3518242..3521415)
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AA seq
1057 aa
AA seq
DB search
MNDRLDTYNRKRRFDETPEPSGARASRKQGSRKTTARASAEALSYVIQEHDARRLHYDFR
LELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGSVIVWDRGT
WEPVGGAAEAARAYAAGKLKFLLHGDKLHGGWTLVRSHMRGSGDKEQWLLIKERDDEARA
ESEYDILKKRPGSVLDGSAPAGKGARTSRTVTASRTTGKAVRKAVAPAQASTDPDAASQS
KRAGKPGAKRASPNRADPARADIVVTRSAQSLRELAASPAIEGAVPARLPATFKPQLATL
VDTAPPGADWSYEIKFDGYRVLVRIDRTTRGNPVKVFTRAGNDWTAKFSKKVKAFEQLEI
DSAWLDGEAVVLDPNGVPNFQALQNAFDSNRPQDIVIYLFDIPFLNGYDLRGVPLEQRRA
ILRALLEEVDDSVLRFSNHFDFSADHLLRSACDMALEGIIGKRRDSGYMSGRSSAWIKLK
CRRRQEFVIGGYSEPSGSRAAFGALLLGVYDGNGQLQYAGRVGTGFDAALLRSVKQELDA
HESRHMPFAAAPRERSRTPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRNDKPARQIV
KETPRQGADVQQQTDSLSDDPPKKRGARKTSGSAAAGAGAEEAGAASTAGTAASKAAGAK
SASGKATAGAEATSAKATSANATGAKATSAKATSAKATSAKATSAKATSAKKAISAEATG
TKKTAASKSMASKSMATKSTATQASATTQNAATKSNATQIPAEVAGVRISHPERVMDSSS
GTRKIALVQYYEAVADWMLPHLQDRPVSLVRAPEDIGGELFFQKHSQKLSIPNVTQHPDL
DPGHPPLITVDTLKALVGAAQMGTVEFHTWNAVVSNIEKPDRMVFDLDPDASLGWERMIE
AAQMTRSLLEELGLTSFCKTSGGKGLHVVVPLAKQAGWDEVKDFSQAVAQHMAATLPKYF
SAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSARARPGLGVSVPLTWDEVAATTGGDQWTI
ENLHERLADLKSDPWADYAKTRQRITAAMKKRLDGAR
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgactcgacacctacaaccgcaaacgccgcttcgacgaaacgccggagccc
tcgggcgcgcgcgcgagccgcaaacagggcagccggaagacgaccgcacgggcatccgcc
gaggcgctctcctacgtgattcaggagcatgacgcgcgccgtttgcactacgacttccgg
ctcgaactgaacggcacgctgctgtcatgggcggtgccgaaggggccgagcctggacccg
tcggtgaaacggcttgcggtgcatgtcgaggaccatccggtcgaatacggttccttcgaa
ggggagattccaccgggcaattacggcgcgggcagcgtgatcgtgtgggaccgcggcacg
tgggaaccggttggcggggcggcggaggcggcgcgcgcctacgcggccggcaaactcaag
ttcctgttgcacggcgacaagctgcacggcggctggacgctagtgcgcagccatatgcgc
ggcagcggcgacaaggagcaatggctgctcatcaaggagcgcgacgacgaggcgcgcgcc
gagagcgagtacgacatattgaagaagcgcccgggcagtgtgctcgacggcagcgccccg
gcgggcaaaggcgcgagaacgtcgaggaccgtcacagccagccgcacgaccggaaaggcg
gtgcgcaaagctgtcgcgcctgcgcaagccagcacggacccggacgcggcgtcccagtcg
aaacgagccggcaagcccggcgcgaagcgcgcttcaccgaaccgtgccgaccccgcgcga
gccgatatcgtcgtgactcgcagcgcgcagtcgctgcgcgaactcgccgcttcgcccgcc
atcgagggtgcggtgccggcccgcttgcccgcgacgttcaaaccgcaactggcgacgctc
gtcgacaccgcgcctcccggcgccgattggtcgtatgaaatcaagttcgacggttatcgc
gtgctggtccgaatcgacaggacgacgcggggaaacccggtcaaggtgttcacccgcgcc
ggcaatgactggaccgcgaagttcagcaaaaaggtcaaggcgttcgaacaactcgagatc
gacagcgcgtggctcgatggcgaagccgtcgtgctggacccgaacggcgttccgaatttt
caggcgctgcaaaacgctttcgattcgaaccgtccgcaggacattgtgatctacctgttc
gacataccttttctgaacggctacgacttgcgcggcgtgccgctcgaacagcgccgcgcg
attctgcgcgcgctgctggaagaggtcgacgacagcgtgttgcgcttctcgaaccacttc
gacttcagcgccgaccacctgctcaggagcgcatgcgacatggcgctggaaggcatcatc
ggcaagcgtcgcgatagcggctacatgtcgggacgctcgtccgcatggatcaagctgaag
tgccgccgacgccaggagttcgtgatcggcggctattcggaaccgtccggcagccgcgcg
gcattcggtgcgctgctgctcggtgtctacgacggcaacggccaattgcagtacgcgggg
cgggtgggcaccggtttcgacgcggcgctgttgcgctcggtgaagcaggagctcgacgcg
cacgagagccggcacatgccgttcgcggccgcgccgcgcgagcgcagccgcacgccggtg
cattgggtcgaaccggtgctcgtcgccgaatgcaatttcgcggaatggacgagcgacggc
atcgtgcgtcaggcgtcgttcgtgagtctgcgcaacgacaagccggcgcgtcagatcgtc
aaggaaacacctcgccagggagccgacgtgcaacagcaaaccgattctttgtccgacgac
ccgccgaagaagcgcggggcgcggaaaacttccgggagcgctgcggctggggctggggcg
gaagaagcgggggcagcgagcacggcgggaacggcggccagtaaggcagcgggcgcaaaa
agcgcgagcggcaaggccaccgccggcgctgaagctactagtgccaaggctactagcgcc
aatgccaccggtgccaaagctaccagcgccaaagcgaccagtgccaaagcgactagcgca
aaagccactagcgcaaaagccactagcgcaaaaaaagccatcagcgccgaagctaccggc
acaaaaaaaacggccgccagcaaatccatggccagcaaatccatggccaccaaatccacg
gccacccaagcctctgccaccacgcaaaacgcagcgacaaaatcaaacgccacacagatt
cccgctgaagtcgcgggcgtgcgcatctcccaccccgagcgcgtcatggactcaagcagc
ggcacgcgcaagatcgctctcgtgcagtactacgaagcggtcgccgactggatgctgccg
catctgcaggatcgcccggtgtcgctggtgcgcgcaccggaggacatcggcggtgaattg
ttcttccagaagcacagccagaagctgtcgattccgaacgtgacccagcatcccgacctc
gatccgggtcatccgccgctgatcaccgtcgacacgctcaaggcgctggtcggcgccgcg
cagatgggcaccgtcgaatttcacacgtggaacgcggttgtgtcgaacatcgaaaagccg
gaccgcatggtgttcgacctcgaccccgacgcgtcgcttggctgggagcgcatgatcgag
gccgcgcaaatgacccgttcgctgctcgaagaactcggcctcacgtcgttctgcaagacg
agcggcggcaagggcctgcacgtggtcgtgccgctcgcgaaacaggccggctgggacgaa
gtgaaggatttttcgcaagccgtcgcgcagcacatggcggcgacgctgcccaagtacttc
agcgcgaagatgggcgcgcagaatcgcaagcagaaaattttcgtcgactacctgcgcaac
aaccgcggttcgagtacggtcgccgcgttctcggcgcgtgcgcggccgggcctgggcgta
tcggtgccgctgacgtgggacgaagtcgccgccaccacgggcggcgatcaatggaccatc
gagaatctgcacgaacgcctcgccgacctcaagagcgacccgtgggcggactatgcaaag
acgcgccagcgcattaccgccgccatgaagaaacgcctggacggcgcacggtaa
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