Parabacteroides sp. CT06: CI960_07020
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Entry
CI960_07020 CDS
T05011
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
parc
Parabacteroides sp. CT06
Pathway
parc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
parc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CI960_07020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parc03400
]
CI960_07020 (mfd)
Enzymes [BR:
parc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CI960_07020 (mfd)
DNA repair and recombination proteins [BR:
parc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CI960_07020 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AST53113
UniProt:
A0A223HL00
LinkDB
All DBs
Position
complement(1611729..1615091)
Genome browser
AA seq
1120 aa
AA seq
DB search
MEVQELLKLYAAHPQVTALDTLLKNDTSRNIFLKGLNGSGPAMTIASLFTKGRGSYVCVL
NDQEEAGYFYHDLMQLTASNEVYFFPSAYRRAIKYGHVDPANEILRTEVLSRLQDPDASF
VIVTYPDALAERVVAREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYAL
RGSILDVFSFSYEFPYRIDFFGDEVETIRTFDVETQLSKEKLDSIYIVPEMSKDAKDSTS
LLGSLPRNTFIAARDLAWCKERIGSVWNDDPVVADEESFADIDQMRKKLVRGEDFLREVL
DFRRIHFGARPMGTADATIHFSTQTQPIYHKNFDRVSESFHKYLDEGYTLYILSDQEKQA
NRIRMIFEDRGDNIPFTAVNRTIHEGFADDTLRICFFTDHQLFDRFHKFNLKSDKARSGK
ITLSLKELNQFSQGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIKLIYQNNDIIFVSIHSL
HKLSKYKGKESGEPPKLSKLGTGAWEKMKERTKAKVKDIARDLILLYSKRKQETGFAYAP
DSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLICGDVGFGKTEVAIRAAFKA
VSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRARTAAQIKATLKELKEGEVN
ILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQF
SLMGARDLSSITTPPPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEM
EALVRREVPDARVAVGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIII
NNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPLTSLTQEARRRLQAIENFSELGSGIHI
AMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKSEEFADLYADNAEGHRDT
GSEYVRETYIESDLELMFPPTYIPNDSERISLYRELDNMEEERDILAFTERLKDRFGKIP
KEGKELIRIVRLRRMAKKLGMEKVVLKKGQMSLFLVNNPDSPYYQSEAFGKLLGFIQKHP
RECNLREQNGKRSIVIKNVPTVEAACGYLQEMEKINSTDF
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttggaagtacaagaattattgaaactatatgccgctcacccgcaagtgacggcgctggac
accctactgaaaaacgatacgtcccgcaatatattcctaaagggactgaatggctcgggt
ccggcgatgacgatcgcctctctttttacgaaaggaaggggaagctatgtgtgtgtgttg
aacgaccaagaggaagccggctatttctatcacgacttgatgcagcttaccgccagcaat
gaggtatacttcttcccatccgcttaccggagggccatcaagtacgggcatgtcgatccg
gcgaacgagatcctgcgcaccgaggtactcagccggttgcaagacccggacgcctctttc
gtaatcgtcacgtatccggacgccttggcggaacgagtcgtggcccgggaggtattgaag
gagaataccttaaaaatcagcgtgggcgagaagctggataatatgtttgtctccgacgtg
ctggacgagtatggcttcgagcaggtcgattatgtatatgagccggggcagtacgccctc
cggggcagtatcctcgacgttttctctttctcctacgagttcccctaccgtatcgacttt
ttcggcgacgaggtggagaccatccgtacgttcgacgtggagacgcagctcagcaaggag
aagctggacagcatctatatcgtaccggagatgagcaaggacgccaaggatagtacttcc
ttgctaggttccctcccccggaacaccttcatagcggcgagagatctcgcatggtgcaag
gagcgcatcggaagcgtatggaacgacgatccggtggtagccgacgaggaatccttcgcc
gatatcgaccagatgcggaagaaattagtccggggcgaggacttcctacgggaggtcttg
gatttccgtcgcattcatttcggggcacggccgatgggaacggcggacgctaccatccat
ttctctacgcaaacgcagccgatctatcataagaatttcgaccgggtgagcgagtcgttc
cataaatacctcgatgagggctatacattatatatattgagcgatcaagagaaacaagcc
aaccgtatccggatgattttcgaggataggggcgacaatatccctttcaccgccgtaaac
cgcacgatacacgagggattcgccgacgatacgctacgcatctgctttttcaccgaccat
caattgttcgaccgcttccacaagttcaacttgaagagcgataaggcacgaagcggaaag
atcaccctttcgctcaaggaactgaaccagttctcgcaaggggattatatcgtacatatc
gaccatggcgtaggacagttcgggggattggtacgcaccgaggtgaacggtaagatgcaa
gaggccatcaaattgatttatcagaataacgatattatattcgtcagcatccattccctg
cataaattatcgaaatacaaggggaaagagagcggcgagccgcctaagttgagcaagctc
ggcacaggcgcatgggaaaagatgaaggaacgtaccaaggcgaaggtgaaggatatcgcc
cgggacttgatcctcctctattccaaacgtaagcaagagacgggtttcgcctatgcgccg
gacagcttcatgcagcatgagctggaagccagcttcatctatgaggacacgccggaccag
atgaaggcgaccgccgaggtcaaggcggatatggaaagtacccgtccgatggaccggttg
atttgtggagacgttggtttcggaaagaccgaggtagctatccgcgccgcgttcaaggcg
gtatcggacaataagcaggtggccgtgttggtacccaccaccgtactggctttccagcat
taccagacgttttgtgagcgcttgaaggatttcccttgcaagatcgattatatcagccgg
gcccgtacggccgcgcaaatcaaggctaccttgaaagagctgaaagagggcgaggtgaat
atcttgatcggcacccaccggatcgtcggcaaggacgtgcgcttcaaggatctgggcttg
cttatcatcgacgaggagcagaagttcggggtatccgtcaaggagaagcttcggcagctg
aaggtgaacgtggacaccttgaccatgacggccaccccgatcccccgtaccctacagttc
tccttgatgggggcccgggatctttccagcatcaccacgccaccgcccaaccgttatccc
gtgcagacggaggtggagcgtttcaaccccgatattatccgggaagcgatcaatttcgag
atgagccggaacgggcaggtgttcttcatcaacaaccgtatccagaacatctacgagatg
gaagccttggtacggcgagaagtccccgacgcacgggtagccgtggggcacgggcagatg
gaaccggagaagctagaaaagatcatcctcgatttcgtgaattatgagtatgacgtattg
atagccaccagtatcgtggagagcggcatcgacgtgcccaacgccaatacgatcatcatc
aacaacgcccagcaattcgggcttagcgacctccatcagctacgcggacgtgtaggacga
agcaaccggaaagccttctgctacctcctttccccgcccctcacctcgctgacacaggag
gcacgacgcaggttgcaggcgatcgagaacttctccgagctgggtagcggtatccatatc
gccatgcaagacctcgacatccggggagccgggaatatgctaggcgccgagcaaagcggt
ttcatcgccgacctaggctatgagacgtaccagaagattttggaagaggcggtagacgaa
ttgaaaagcgaggaattcgccgatctttacgctgataatgccgaagggcaccgggatacg
ggcagcgaatacgtccgggagacctatatcgagagcgacctggaattgatgttccctccc
acctacatccccaacgactcggaacgtatttccctataccgggagttggataatatggag
gaggaacgtgacatcctcgcctttacggagcgcctgaaagaccgcttcggcaagataccg
aaggagggcaaggagttgatccggatcgtgcgcctccgtcgcatggccaagaaactgggc
atggagaaagtggtcctgaagaaagggcagatgagcctcttcttggtgaataacccggat
agcccgtattaccaaagcgaggcgttcggcaagctgctgggcttcatccaaaagcatccc
cgtgagtgtaacctccgggagcagaacggcaagcgaagtatcgtgatcaagaacgtccct
acggtggaagcggcatgcggctacctgcaagagatggaaaaaataaactcaaccgacttt
tga
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