Parageobacillus sp. KH3-4: PspKH34_00270
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Entry
PspKH34_00270 CDS
T08468
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
parg
Parageobacillus sp. KH3-4
Pathway
parg03030
DNA replication
parg03430
Mismatch repair
parg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PspKH34_00270 (holB)
03430 Mismatch repair
PspKH34_00270 (holB)
03440 Homologous recombination
PspKH34_00270 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parg03032
]
PspKH34_00270 (holB)
03400 DNA repair and recombination proteins [BR:
parg03400
]
PspKH34_00270 (holB)
Enzymes [BR:
parg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PspKH34_00270 (holB)
DNA replication proteins [BR:
parg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PspKH34_00270 (holB)
DNA repair and recombination proteins [BR:
parg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PspKH34_00270 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
DNApol3-delta_C
DUF4600
Polysacc_deac_1
TIP49
Motif
Other DBs
NCBI-ProteinID:
BDG45466
LinkDB
All DBs
Position
38357..39355
Genome browser
AA seq
332 aa
AA seq
DB search
MNVAMEWEQLERYQPAVVKMITKSLEKGRISHAYLFEGQRGTGKKAMSLLLAKSLFCLNR
SGIKPCNECRNCRRIDSGNHPDVHVIEPDGQSVKKEQIEMLQQEFTKMAVESDRKLYIIE
HADRMTTNAANSLLKFLEEPRPGTVAILLTEQYHRMLETIISRCQVFSFKPIPPALLANY
LEEQQIPPHIAFLAAHVTNNHEEALRLSRDDWFAQARKIVLQLYETLKKNDLQALFFVHD
QWMPHFQEKQQIDLGLDLLLYIYKDMLHIQLGQVDKIIYRDRLDDLRQWSLSCSQQQIVK
SMEMILRATARLNTTNMSVQLLMEQLILDLKE
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtggctatggaatgggagcagctcgaacgatatcaacctgcggtagtgaaaatg
attacaaaaagtctggaaaaagggcggatttctcatgcttatttgtttgaggggcagcgc
ggaacgggaaaaaaggcgatgagtcttttattagcaaaaagcttattttgtttaaatcgc
tccgggataaagccatgcaatgaatgccgaaattgccgcagaatcgattccggaaaccat
ccggatgtgcatgtcattgaaccagacgggcaatcggtgaaaaaagagcaaattgaaatg
ctgcagcaagagtttacaaaaatggcggtggagtcagaccgaaagctatatattattgag
catgctgacagaatgacaacgaacgcagcgaatagcttgttaaaatttttagaagagcct
cgtccagggacggtagcgatattgcttacagaacaatatcaccgcatgttggaaacgatc
atatcccgttgccaagtgttctcgtttaagccaattccaccagctttgcttgccaattat
ttggaagaacagcaaattccgcctcatattgctttccttgctgcacatgtgacaaacaat
catgaagaagcgctcagattaagccgagatgattggtttgcgcaggcgagaaaaatagtg
ttacaattatatgaaacgttaaagaaaaatgatttgcaggcacttttttttgttcatgat
caatggatgcctcattttcaagaaaagcaacaaatcgatttaggattagatttgctttta
tatatatataaagatatgctgcatattcaattaggacaagttgacaaaatcatttatcgt
gatcgtcttgatgatttgcgacaatggtcgctttcctgttctcaacaacaaattgtaaaa
agtatggaaatgattttgcgagcaacagcgcgtttaaatacaaccaatatgagcgtacag
cttttaatggaacaacttatccttgacctaaaggagtaa
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