Paralcaligenes sp. KSB-10: LSG25_05940
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Entry
LSG25_05940 CDS
T07761
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
park
Paralcaligenes sp. KSB-10
Brite
KEGG Orthology (KO) [BR:
park00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
park03009
]
LSG25_05940 (dbpA)
Enzymes [BR:
park01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LSG25_05940 (dbpA)
Ribosome biogenesis [BR:
park03009
]
Prokaryotic type
rRNA helicases
LSG25_05940 (dbpA)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
P-loop_SecA
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UHL65429
LinkDB
All DBs
Position
1302969..1304357
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AA seq
462 aa
AA seq
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MTTTSFSSLPLTPATLDNLNNLGYVDMTPIQAQSLPSILEGRDVIAQAKTGSGKTATFGL
GILHKLNPADFAIQALVLCPTRELADQVANELRRLARAAGNVKILTVCGGTPIRPQIESL
ARGAHIVVGTPGRLLDHIDRNSIDLSAIQTLVLDEADRMIDMGFYDDIVTVVNACSAKRQ
TLLFSATYPDDIRKASARFLVKPTEVKVESQHDASQIEQHFYEIAPESRNAAVAQLLEHF
RPVSTLAFCNTKAQCETLAAELRSRGFSALALHGDLDQREREDVLVQFSNQSCSVLVATD
VAARGLDIQTLGAVINVDVTPDAEVHIHRIGRTGRGQEKGLALSLCAPYEMRWANLIEQY
QGKPLVWSDLAALKPAPGGRLRAPMVTLCIQGGKKDKLRPGDLLGALTGDAGLNADQVGK
INIFNFVSFVALDRRIAKEAYAKLGNSNIKGRRFRMRFMPEN
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacgacttccttttccagccttccccttacgcccgccacgctcgacaacctcaat
aacctgggctacgtcgacatgacgcccatccaggcgcaaagcctgccttcgattcttgaa
ggccgcgacgtgatcgcccaggccaaaaccggcagcggcaaaaccgccaccttcggcctg
ggcatattgcacaagttgaaccctgccgattttgccatccaggccctggtcctgtgcccc
acccgcgaactcgccgaccaggtggccaacgagctgcgccgtcttgcccgcgccgccggc
aatgtgaaaatactgacggtatgcggaggcactcccatccggccgcaaatcgaatccctg
gcgcgcggcgcgcatatcgtggtgggcaccccgggcaggctgctcgaccatatcgaccgc
aacagcatcgatttatcggctatccaaaccctggtgctggacgaagccgaccgcatgatc
gacatggggttctacgacgatatcgtcaccgtcgtgaacgcgtgctcggcaaagcggcaa
acgctgctgttttcggcaacctatcccgatgatatccgcaaggccagcgcccgcttcctc
gtcaagccaaccgaagtcaaagtggagtcgcagcacgacgccagccagatcgaacagcat
ttctatgaaatcgccccggaaagccgcaatgcggcggtggctcagttgcttgagcatttc
cgtccggtatccacgctggctttctgcaacaccaaggcacaatgcgaaacgcttgcggca
gagttgcggagccgcggtttcagcgccctggcgctgcatggcgatctggaccagcgtgaa
cgcgaagatgtgctggtgcagttttccaaccagagttgttcagtgctggtggcgaccgat
gtcgcggcgcgcggcctggacatacaaaccctgggggcggtgatcaacgtcgatgtcacg
ccggacgccgaggtgcatatccaccgcatcggacgcaccgggcgcggccaggaaaaaggc
ctggccttgagcctgtgcgctccgtacgaaatgcgctgggccaatctgatcgaacagtat
caaggcaagcccctggtctggtcggatctggccgcgctcaagccggctcccggcggccgc
ctgcgggcacccatggtcacgctctgcattcagggcggcaaaaaagacaagctgcgcccg
ggtgatctattgggcgccctcacgggagatgcgggcctgaatgcggatcaggtcggcaag
ataaatattttcaatttcgtgagctttgtggcgctggaccggcgtattgccaaggaagcc
tacgccaagctgggcaacagcaatatcaagggccgccgcttcagaatgcgcttcatgccg
gaaaactag
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