Paralcaligenes sp. KSB-10: LSG25_16780
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Entry
LSG25_16780 CDS
T07761
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LSG25_16780 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
park03400
]
LSG25_16780 (uvrA)
DNA repair and recombination proteins [BR:
park03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LSG25_16780 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LSG25_16780 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_23
DnaJ_CXXCXGXG
AAA_21
AAA_22
nSTAND3
APS_kinase
AAA_25
Viral_helicase1
NACHT
cobW
RNA_helicase
MeaB
MMR_HSR1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UHL63675
LinkDB
All DBs
Position
complement(3659495..3662353)
Genome browser
AA seq
952 aa
AA seq
DB search
MDAIRIRGARTHNLKNISIDLPRRKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMDKPDVDLIEGLSPAISIEQKSAGHNPRSTVGTITEIHDYLRLLYARVGTPYC
PDHGLPLQAQSVSQMVDKVMTWAADTRLAILAPLARSRKGSFEDECASLQAQGFVRLRVN
GEMIEIDQLTPLKKTEKHDVDVVIDRLRIKPESQQRLAESFETALNLAEGRVLALNMDTG
EEQAFSSRYACPVCHHSLTELEPRLFSFNNPVGACPACDGLGHVDFFDPKRVVAFPELSL
ASGAVHGWDRRNAFTHTLLTSLAAHYGFDIDTPFEELGAEVRQCVLYGSGAEEIPFLYLN
EKGRSTVKKHAFEGIIPNLERRWRETDSNAVREDLGKLRHTKTCPDCGGSRLRTEARHVL
IGHEVGTAQRRGRAIFEVEAMPLSACLAWFQALELTGAKKEIAERIVREIEARLQFLNNV
GLNYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIETLQH
LRDLGNSVIVVEHDEDMIRSADFVIDMGPGAGEHGGRIVASGTPQTLTENPDSLTGQYLS
GARRIEIPLRRPVNDGLDWLYLKGCTGNNLKAVDLALPAGRLVCITGVSGSGKSTLINDT
LATAVAQQLHRAQTESAPYESLDGLSHFDKIINVDQSPIGRTPRSNPATYTGMFTPIREL
FSSVPESRTRGYDPGRFSFNVKGGRCEACQGDGVVKVEMHFLPDMYVPCDVCGGKRYNRE
TLEIRYRGRTISEVLDLTVEQALLYFEAVPTVARKLNTLMDVGLSYVRLGQSATTLSGGE
AQRVKLSLELSKRSTGRTLYILDEPTTGLHFQDISLLLEVLRQLVDAGNTVVIIEHNLDV
IKTADWVIDMGPEGGDGGGRIVAQGTPETIAATPASHTGRYLKPLLGAHLPA
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgattcgcatccggggcgcccgtacgcacaacctgaaaaacatctccatcgac
ctgccgcggcgcaagttggtagtggtaacagggctatccggatccggaaaatcgtcgctg
gcgttcgacacgctatacgccgaagggcagcgccgctacgtggaaagcctgtcggcctat
gcccggcaattcctgcagctaatggacaagcccgatgtagacttgatcgaaggcctgtcg
ccggcgatttcgatcgaacagaagtcggcgggccacaatccgcgatccaccgtaggcacg
attaccgaaatccacgattatctgcgcctattgtacgcgcgggtcggcaccccttattgc
cccgatcacggcctgccgctgcaagctcaaagcgtgagccagatggtcgacaaagtcatg
acctgggccgcagatacccgtctggctatcctcgcccccctggcacgctcacgcaaaggc
agtttcgaagatgaatgcgccagcttgcaggcgcagggcttcgtgcggctgcgggtgaac
ggcgagatgatcgaaatcgatcaactcaccccgcttaaaaaaaccgagaagcacgatgtg
gacgtcgtcatagaccggctgcgcatcaagcccgaaagccagcaacgcctggccgaaagc
tttgaaacagccttgaatctcgcggaaggccgggtgcttgccctgaatatggataccggc
gaagaacaggctttttccagccgctacgcgtgtccggtttgccatcacagcctgaccgag
ctggaaccgcgcctgttcagtttcaataatcccgtgggcgcctgccccgcctgcgacggc
ctgggccatgttgattttttcgacccgaagcgcgtcgtcgcctttcccgaactcagcctg
gcaagcggcgcggtgcatggctgggatcgccgcaatgcctttacccatacactgctgacc
agcctggccgcgcattacggcttcgatatcgacacgcctttcgaggagctcggcgccgaa
gtgcggcaatgtgtgctgtacggttcgggcgcggaagaaatcccgtttttgtacttgaac
gaaaaaggccgctcgaccgtcaagaaacatgctttcgaaggcattattcccaatcttgag
cggcgctggcgcgaaaccgactcgaacgccgtacgcgaagacctcggcaagctgcggcac
accaaaacctgccccgactgcggcggctcgcgcctgcgcaccgaagcgcgccatgtgctg
atcggccacgaggtgggtacggcccaacggcgtggccgcgccattttcgaagtcgaagca
atgccgctgtcggcgtgcctggcctggttccaggcgctcgagctgacgggcgccaaaaag
gaaatcgccgagcgcattgtgcgtgaaatcgaagcccgcctgcagttcctgaataatgtc
ggactcaattatctgtcgctggaccgcagcgccgacacgatttcgggcggcgaggcgcag
cgtatacgcctggccagccagatcggctcgggcctgaccggcgtcatgtatgtgctggac
gagccctcgatcgggctgcaccagcgcgacaatgaccgcctgatcgaaaccctgcagcat
ttgcgcgacctgggcaacagcgtgatcgtggtcgaacacgacgaagacatgatacgttcg
gccgatttcgtgatcgacatgggccccggggccggcgaacacggcggccggatcgtggcg
tccggcacgccgcaaaccctgaccgaaaatcccgattccctgaccggccagtacctgagc
ggagcgcggcgcatcgaaataccgctccggcggccggtcaacgacgggctcgactggctg
tatctcaaaggctgtaccggcaacaacctcaaggcggtcgatctggcgctcccggccggg
cgcctggtctgcattacaggcgtttcaggctcgggcaagtccaccctgatcaacgatacg
ctggccaccgccgtcgcccagcaactgcatcgggcccagaccgaatccgcgccttacgaa
tcgctggacggcctgtcgcatttcgacaagatcatcaatgtcgatcagagtcctatcggg
cgcacgccgcgcagcaatccggccacctataccggcatgttcacgccaatacgcgagctc
ttttccagtgttccggagtcgcgcacacgcggctacgacccggggcgcttttccttcaac
gtcaagggcgggcgctgcgaagcctgccagggcgatggcgtcgtcaaagtcgaaatgcat
ttcctgcccgatatgtatgtgccttgcgatgtgtgcggcggcaagcgctacaaccgcgaa
accctcgagatccgctaccgcggccgcaccatcagcgaagtgctggacctgaccgtcgag
caggcgctgctgtatttcgaggccgtgcccacggtggcgcgcaagctgaacacgctcatg
gatgtaggcctgtcgtacgtgcgcctggggcaaagcgccacgacgctgtcgggcggtgag
gcgcagcgcgtcaaattatcgctcgagctgtccaagcgcagcaccggccgcaccctttat
atcctggacgaacccaccaccggcctgcatttccaggatatttcgctgctgctggaagta
ctgcgtcaactggtcgatgccggcaataccgtagtcattatcgagcacaatctggatgtc
ataaaaacggcagactgggtgatcgacatgggtccggaaggcggcgacgggggcgggcgc
atcgtcgcgcaaggcactcctgaaaccatcgccgccacaccggccagccacaccgggcgc
tacctgaagccactgttgggcgcccacctgccggcctga
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