Paracoccus sp. Arc7-R13: EOJ32_18230
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Entry
EOJ32_18230 CDS
T06050
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
parr
Paracoccus sp. Arc7-R13
Pathway
parr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
parr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EOJ32_18230 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parr03400
]
EOJ32_18230 (ligD)
Enzymes [BR:
parr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EOJ32_18230 (ligD)
DNA repair and recombination proteins [BR:
parr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EOJ32_18230 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AZY95729
UniProt:
A0A3Q9TK94
LinkDB
All DBs
Position
unnamed2:97357..99729
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AA seq
790 aa
AA seq
DB search
MADLGAYLDKRDFGATPEPQADGTPSALGLRYSMQNHDATRLHWDLRLEWDGVLLSWAVT
RGPSLDPADKRLAVRTEDHPLSYLTFEGTIPKGHYGAGTVMLWDLGWWQPLEPAARGLAK
GHLKFRLHGRRMTGDWNLIRMARRDKRDNWLLVKIDDEAAGQRDPVARYRTSVASGRSFA
AIRADKAACAPDHSGTRPGHRPVQLATLTDDLADHATHWHELKLDGYRAQVALGAGGPRV
FTRAGHDWTDRFADLIPALRDIPCASALIDGEIVAGAGLQGFGTLQDAIAAGGPFGYVAF
DLLQLDGRDLTDQPLTERRAALEGLLRPLPPMGAVALSPVIHGLADEALALICGNGGEGV
IAKRTDAPYRGGRSRDWLKIKCRRQGTFRIVGWQASTSRGRPFASLALACDRDGGLAYMG
KVGTGFDQDTMADLARRMEPLVRRDAPVKAPRREVAGMTWIDPDLTARIDYAETTAQGRL
RHAVYLGLHDEGPPMRTPAPTIAISSGDRVIFDKPRLTKAGLAEYYRAAAPLMLPELTGR
PLSLLRLPDGMAGERFFQKHPGKGFPAALKVQQIADKDGATSPYAYVTDVDGILGAVQMG
TVEFHIWGARRDRLDRPDRMVFDLDPDEGLGFAATRRAALELRDRLSRLGLRSWAMLSGG
KGVHVIVPLRRTAGWDTVKLFSRGVAMLTAQAHPDRFTAEMSKAKRKGRIFVDWLRNERG
ATAIAPFSVRARPGAPVACPVSWDELGRIRKAGAFSTVQALERGWADTDPPPAQTLSAAV
IAALDAALTA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggccgacctgggcgcctatctggacaagcgcgatttcggagcgacccccgaaccgcag
gcggacggcaccccttcggcgcttgggctgcgctattcgatgcagaaccacgacgccacg
cggctgcactgggacctgcggctggaatgggacggggtgctgctgtcctgggcggtgacg
cgggggccgtcgctggaccctgccgacaagcggctggccgtgcggaccgaggatcacccc
ctgtcctatctgaccttcgagggcacgatcccgaagggccattacggcgcgggcaccgtg
atgctgtgggatctgggctggtggcaaccgctggaacccgcggcgcgcgggctggccaag
gggcacctgaagttccggctgcacggtcggcggatgaccggcgactggaacctgatccgc
atggcgcgccgggacaagcgcgacaactggctgctggtcaagatcgacgacgaggccgcc
ggccagcgcgacccggtggcgcgctatcgcaccagcgtggcgtcggggcgcagctttgcg
gcgatccgcgcggacaaggccgcctgcgcgcccgaccattccggcacccgtcccggccac
cggcccgtgcagctggcgacgctgacggacgatctggccgatcacgccacgcattggcac
gagctgaaactggacggctatcgcgcgcaggtggcgcttggcgcgggtggcccgcgcgtc
ttcacgcgggcgggccatgactggaccgaccgtttcgccgacctgatccccgccctgcgc
gacatcccctgtgcctcggccctgatcgacggagagatcgtggccggcgccgggctgcag
gggttcggcacgctgcaggacgcgatcgcggcgggcgggccgttcggatacgtggccttc
gatctgctgcagctggacgggcgcgacctgacggaccagcccctgaccgaacgccgcgcc
gcgctggagggcttgctgcgccccctgccgccgatgggcgcggtggcgctgtcgcccgtc
atccacggcctggcggacgaggcgctggcgctgatctgcggcaatggcggcgagggggtg
atcgccaagcggaccgatgccccctatcgcggcgggcgcagccgcgactggctgaagatc
aagtgccgcaggcagggcacgttccgcatcgtcggctggcaggcaagcaccagccgcggc
aggcccttcgcctcgttggcgctggcctgcgaccgggacgggggactggcctatatgggc
aaggtcggaaccgggttcgaccaggacacgatggccgaccttgcccgacgcatggaaccg
ctggtgcgcagggacgcccccgtcaaggccccccgccgggaggtcgcgggcatgacctgg
atcgacccggacctgaccgcccggatcgattacgccgaaaccaccgcccagggtcgcctg
cgccatgcggtgtatctgggcttgcacgatgagggtccgccgatgcgaacgcccgccccg
accatcgcgatcagcagcggcgatcgcgtgatctttgacaagccgcgcctgaccaaggcg
gggctggccgagtattatcgcgcggccgcaccgctgatgctgcccgaactgaccgggcgg
cccctgtccctgctgcgcctgcccgacggcatggccggcgagcggttctttcagaagcac
cccggcaagggctttcccgccgcgctgaaggtccagcagatcgccgacaaggacggcgcg
accagcccctatgcctatgtcaccgacgtcgacggcatcctgggcgcggtgcagatgggc
acggtcgaattccacatctggggcgcccgtcgcgaccggctggaccggcccgaccgcatg
gtctttgacctggaccctgacgagggcctgggctttgccgcgacccgccgcgccgcgctg
gagttgcgcgaccggctgtcgaggcttggccttcggtcctgggcgatgctgtcggggggc
aagggcgtccatgtgatcgtgccgctgcgccgcaccgcgggctgggacacggtcaagctg
ttcagccgcggcgtggcgatgctgacggcacaggcccatcccgaccgcttcaccgccgag
atgtccaaggcaaagcgcaagggccgcatcttcgtcgactggctgagaaacgaacgcggc
gcgacggccatcgcgcccttctccgtgcgcgcccgccccggcgcgccggtggcctgcccg
gtcagctgggacgaactggggcgcatccgcaaggctggggcgttctcgaccgtgcaggcg
ctggagcggggctgggccgacaccgacccgccgcccgcccagaccctgtcggcggccgtg
atcgcggcgctggacgcggcgctgacggcctga
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