KEGG   Paracoccus sp. Arc7-R13: EOJ32_18230
Entry
EOJ32_18230       CDS       T06050                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
parr  Paracoccus sp. Arc7-R13
Pathway
parr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:parr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EOJ32_18230 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:parr03400]
    EOJ32_18230 (ligD)
Enzymes [BR:parr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EOJ32_18230 (ligD)
DNA repair and recombination proteins [BR:parr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EOJ32_18230 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AZY95729
UniProt: A0A3Q9TK94
LinkDB
Position
unnamed2:97357..99729
AA seq 790 aa
MADLGAYLDKRDFGATPEPQADGTPSALGLRYSMQNHDATRLHWDLRLEWDGVLLSWAVT
RGPSLDPADKRLAVRTEDHPLSYLTFEGTIPKGHYGAGTVMLWDLGWWQPLEPAARGLAK
GHLKFRLHGRRMTGDWNLIRMARRDKRDNWLLVKIDDEAAGQRDPVARYRTSVASGRSFA
AIRADKAACAPDHSGTRPGHRPVQLATLTDDLADHATHWHELKLDGYRAQVALGAGGPRV
FTRAGHDWTDRFADLIPALRDIPCASALIDGEIVAGAGLQGFGTLQDAIAAGGPFGYVAF
DLLQLDGRDLTDQPLTERRAALEGLLRPLPPMGAVALSPVIHGLADEALALICGNGGEGV
IAKRTDAPYRGGRSRDWLKIKCRRQGTFRIVGWQASTSRGRPFASLALACDRDGGLAYMG
KVGTGFDQDTMADLARRMEPLVRRDAPVKAPRREVAGMTWIDPDLTARIDYAETTAQGRL
RHAVYLGLHDEGPPMRTPAPTIAISSGDRVIFDKPRLTKAGLAEYYRAAAPLMLPELTGR
PLSLLRLPDGMAGERFFQKHPGKGFPAALKVQQIADKDGATSPYAYVTDVDGILGAVQMG
TVEFHIWGARRDRLDRPDRMVFDLDPDEGLGFAATRRAALELRDRLSRLGLRSWAMLSGG
KGVHVIVPLRRTAGWDTVKLFSRGVAMLTAQAHPDRFTAEMSKAKRKGRIFVDWLRNERG
ATAIAPFSVRARPGAPVACPVSWDELGRIRKAGAFSTVQALERGWADTDPPPAQTLSAAV
IAALDAALTA
NT seq 2373 nt   +upstreamnt  +downstreamnt
atggccgacctgggcgcctatctggacaagcgcgatttcggagcgacccccgaaccgcag
gcggacggcaccccttcggcgcttgggctgcgctattcgatgcagaaccacgacgccacg
cggctgcactgggacctgcggctggaatgggacggggtgctgctgtcctgggcggtgacg
cgggggccgtcgctggaccctgccgacaagcggctggccgtgcggaccgaggatcacccc
ctgtcctatctgaccttcgagggcacgatcccgaagggccattacggcgcgggcaccgtg
atgctgtgggatctgggctggtggcaaccgctggaacccgcggcgcgcgggctggccaag
gggcacctgaagttccggctgcacggtcggcggatgaccggcgactggaacctgatccgc
atggcgcgccgggacaagcgcgacaactggctgctggtcaagatcgacgacgaggccgcc
ggccagcgcgacccggtggcgcgctatcgcaccagcgtggcgtcggggcgcagctttgcg
gcgatccgcgcggacaaggccgcctgcgcgcccgaccattccggcacccgtcccggccac
cggcccgtgcagctggcgacgctgacggacgatctggccgatcacgccacgcattggcac
gagctgaaactggacggctatcgcgcgcaggtggcgcttggcgcgggtggcccgcgcgtc
ttcacgcgggcgggccatgactggaccgaccgtttcgccgacctgatccccgccctgcgc
gacatcccctgtgcctcggccctgatcgacggagagatcgtggccggcgccgggctgcag
gggttcggcacgctgcaggacgcgatcgcggcgggcgggccgttcggatacgtggccttc
gatctgctgcagctggacgggcgcgacctgacggaccagcccctgaccgaacgccgcgcc
gcgctggagggcttgctgcgccccctgccgccgatgggcgcggtggcgctgtcgcccgtc
atccacggcctggcggacgaggcgctggcgctgatctgcggcaatggcggcgagggggtg
atcgccaagcggaccgatgccccctatcgcggcgggcgcagccgcgactggctgaagatc
aagtgccgcaggcagggcacgttccgcatcgtcggctggcaggcaagcaccagccgcggc
aggcccttcgcctcgttggcgctggcctgcgaccgggacgggggactggcctatatgggc
aaggtcggaaccgggttcgaccaggacacgatggccgaccttgcccgacgcatggaaccg
ctggtgcgcagggacgcccccgtcaaggccccccgccgggaggtcgcgggcatgacctgg
atcgacccggacctgaccgcccggatcgattacgccgaaaccaccgcccagggtcgcctg
cgccatgcggtgtatctgggcttgcacgatgagggtccgccgatgcgaacgcccgccccg
accatcgcgatcagcagcggcgatcgcgtgatctttgacaagccgcgcctgaccaaggcg
gggctggccgagtattatcgcgcggccgcaccgctgatgctgcccgaactgaccgggcgg
cccctgtccctgctgcgcctgcccgacggcatggccggcgagcggttctttcagaagcac
cccggcaagggctttcccgccgcgctgaaggtccagcagatcgccgacaaggacggcgcg
accagcccctatgcctatgtcaccgacgtcgacggcatcctgggcgcggtgcagatgggc
acggtcgaattccacatctggggcgcccgtcgcgaccggctggaccggcccgaccgcatg
gtctttgacctggaccctgacgagggcctgggctttgccgcgacccgccgcgccgcgctg
gagttgcgcgaccggctgtcgaggcttggccttcggtcctgggcgatgctgtcggggggc
aagggcgtccatgtgatcgtgccgctgcgccgcaccgcgggctgggacacggtcaagctg
ttcagccgcggcgtggcgatgctgacggcacaggcccatcccgaccgcttcaccgccgag
atgtccaaggcaaagcgcaagggccgcatcttcgtcgactggctgagaaacgaacgcggc
gcgacggccatcgcgcccttctccgtgcgcgcccgccccggcgcgccggtggcctgcccg
gtcagctgggacgaactggggcgcatccgcaaggctggggcgttctcgaccgtgcaggcg
ctggagcggggctgggccgacaccgacccgccgcccgcccagaccctgtcggcggccgtg
atcgcggcgctggacgcggcgctgacggcctga

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