Paracoccus suum: DRW48_03130
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Entry
DRW48_03130 CDS
T05723
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pars
Paracoccus suum
Pathway
pars03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pars00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DRW48_03130 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pars03400
]
DRW48_03130 (ligD)
Enzymes [BR:
pars01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DRW48_03130 (ligD)
DNA repair and recombination proteins [BR:
pars03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DRW48_03130 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AXC48817
UniProt:
A0A344PHG2
LinkDB
All DBs
Position
complement(640889..643315)
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AA seq
808 aa
AA seq
DB search
MESLATYRSKRNFGDTPEPAGVARPRGLGLHYSMQCHDATRLHYDLRLEWGGVLLSWAVT
RGPSLDPADKRLAVRTEDHPLDYLRFEGTIPAGNYGAGVVMLWDIGTWQPVDDIDRGLAK
GHLRLRIIGRRLTGEWHLVRIKGKPSDKGRENWLLIKQEDAAAHQPDPVARYTSSVLTNR
DHAQIAADAEPRPFGPPRKAPAPAFEAPMLPTLVKDAPGADGWWHELKFDGYRGQIQIGA
EGARFRTRSGLDWSDRFESLLPAFEELPAKTALIDGEVVAGADLGGFGALQRAIGEGGPF
RFYAFDLLERDGCDLRDEPLSKRRKALEALLKDAPPMGLIELSTVIDGDGAEVLAPICEA
GGEGIVSKRSDSPWRSGRTTAWLKTKCERRAEFVVLGWQPSDKRGREFSSLLLGTHEGGK
WIYRGKVGTGFDMATQADLAARLERLKAPMVLDKRPADARGAVWVKPQLTVEIRYGEVTD
DGQLRHAAYVGLREDKPAEEVVMDSEAPTTVSDGERVIVATIGVSHPERVLFPPKGPTKL
ELAQYYADIADRMLPMTANRPLSLVRLPDGLGGQAFFQKHLRKGWPKSLKPVPVETSSGV
EDYMYVTDAAGLVGAVQMGTVEFHIWGSRRDNLDRPDRMVFDLDPDEGLDWEKVRTAAFE
MRDVLAELGLPSWPMLTGGKGVHVVIPLRRTVGWDTVKLFSHTVASHCAERWPDRYLANM
SKAKRSGRIFIDYLRNERGSTAIAPFSVRARPGATVAFPLSWQALEDAPGANAYDMKRAL
AEGNWDNVGVPAPASLPAAIKKMAQLWG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgctcgccacctatcgatccaaacgcaatttcggcgacacgcccgaacctgcg
ggcgtcgcaaggccgcgggggctggggctgcattattccatgcagtgccacgacgcgacg
cggctgcattacgatttgcggctggaatgggggggcgtgctgctcagctgggcagtgacg
cgcgggccgtcgctggacccggccgacaagcggctggccgtgcggaccgaggatcatccg
ctggattatctgcgcttcgagggcaccattccggccggcaattacggcgccggggtcgtc
atgctgtgggacatcggcacgtggcagccggtcgacgacatcgaccgcggccttgccaag
ggccacttgcggctgcggatcatcggccggcgcctgacgggcgagtggcacttggtgcgc
atcaagggcaagccctccgacaagggccgtgagaactggttgctgatcaagcaggaggac
gcggccgcgcatcagcccgatccggtcgcgcggtacaccagctcggtgctgacaaatcgc
gatcacgcccagatcgccgctgatgccgagccgcggccctttggcccgccccgcaaggcg
cccgcgccggcattcgaggcgccgatgctgccaacgctggtcaaggatgccccgggcgcg
gatggctggtggcacgaactgaagttcgacggctatcgcggccagatccagatcggcgcg
gagggggcgcggttccgcacccggtccggcctcgactggtcggaccgttttgaatcgctg
ctgcccgcctttgaggaactgcccgccaagaccgcgctgattgatggcgaggtcgtggcc
ggcgccgacctgggcggttttggtgcgctgcaacgtgccatcggcgagggcggcccgttc
cggttctatgccttcgacctgcttgagcgcgatggctgtgacctgcgggacgagccgctg
agcaagcggcgcaaggcgcttgaggcgctgctgaaggacgcgccccccatggggctgatc
gagctgtcgaccgtgatcgatggcgacggcgcggaagtgctggcgccgatctgcgaggcc
ggcggcgaggggatcgtcagcaagcgcagcgactcgccttggcgcagcgggcgcacgacc
gcctggctgaagaccaaatgcgagcgccgggccgagtttgtggtcctgggctggcagccg
tctgacaagcgcgggcgcgagttctcgtccctgctgctgggcacgcatgagggcggcaaa
tggatctatcgcggcaaggtgggcaccgggttcgacatggccacgcaggccgatctggcc
gcccggctggagcgcctgaaagcgccgatggtgctggacaagcgcccggcggatgcgcgc
ggtgcggtctgggtcaagccacagttgacggtcgagattcgctatggcgaggtgaccgat
gatggccaattgcgccacgccgcctatgtcgggctgcgcgaggacaagcccgccgaggag
gtcgtgatggatagcgaggcccccacaaccgtcagcgacggcgagcgcgtcatcgtcgcc
accatcggcgtctcgcaccccgaacgggtgctgttcccgcccaaaggcccgaccaagctg
gagttggcccagtattacgccgatattgccgaccgtatgctgccgatgacggcgaaccgg
ccattgtcgctcgtgcgcctgccggacgggttgggcgggcaggccttctttcaaaagcac
ctgcgcaagggttggccaaagtcgctgaagccggtcccggtcgagacctcgtccggcgtc
gaggactacatgtacgtcaccgacgctgcgggcctggtcggcgcggtgcagatggggacg
gtcgagtttcacatctggggcagccgccgcgacaatctggaccgccccgaccgcatggta
ttcgacctcgacccggatgagggcctcgattgggaaaaggtgcgcactgccgcgttcgag
atgcgggacgtactggcagaactgggcctgccgagttggcccatgctgaccggcggcaag
ggcgtgcatgtggtgatcccgctgcgccgcacggtcgggtgggacacggtcaagctgttc
tcgcatacggtggcctcgcactgcgccgagcgctggccggaccgttatctggccaacatg
tccaaggccaagcgcagcgggcgcatctttatcgactacctgcgcaacgagcgcggctcg
accgccatcgcgcccttttcggtccgggcgcggccgggggcaacggtcgcgttcccgctg
tcgtggcaggcgctcgaggatgcgccgggtgccaatgcctatgacatgaaacgcgccctg
gccgagggcaactgggacaatgtcggcgtgccggccccggcaagcctgcccgccgcgatc
aagaaaatggcccagctttggggctga
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