Pseudomonas asgharzadehiana: KSS96_08455
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Entry
KSS96_08455 CDS
T07697
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pasg
Pseudomonas asgharzadehiana
Pathway
pasg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSS96_08455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pasg03400
]
KSS96_08455 (mfd)
Enzymes [BR:
pasg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSS96_08455 (mfd)
DNA repair and recombination proteins [BR:
pasg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSS96_08455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
QXH68950
LinkDB
All DBs
Position
complement(1829228..1832677)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGGGRERFPAQALPNL
AIEAKANQPLEALSNFLGGFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFISS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgctactccctgccgcggcaggtaaacagcattggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagtgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcattttcccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtaccgcttgccggaa
ctggcccacggcgtgctggtggtgccgatcaccacggcgctgcatcgcctggcgccgacc
aagttcctgctgggcagcagcctggtgctggatatcggccagaagctcgatgtggaacag
atgcgcacacgcctggaagccagcggttaccgttgcgtcgacacggtgtacgagcacggc
gagttcgcggtgcgcggcgccctgatcgacctgttcccgatgggcagcaagttaccgtac
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgatccggaaaaccag
cgttccatcgacaaggtggaatcggtcaagctgttgccggcgcgggaatttccactgcaa
aaagatgcggtcacccgtttcaaggcgcgctttcgcgagcgcttcgacgtggacttccgc
cgctgcccgatcttccaggacttgagcagcgggattacgccggccggtatcgagtactac
ctgccgttgttcttcgacgaaacctcgaccctgttcgattacctgccccaggacacccaa
gtgttctcgctgccaggcattgagcaagcggccgagaacttctggaacgacgtgcgcaac
cgctacgaagaacgccgcgtcgacccctcccggcctttactgccgcccgccgaactgttc
ctgccggtggaagactgcttcgcacgcctcaaaaactggccgcgcgtggtcgccagccaa
caggacgtggacgcaggcggtggccgcgaacgtttcccggcgcaagcgttgccaaacctg
gcgattgaagccaaggccaaccagccgctggaagcgctgtcgaacttcctgggtggcttc
cccggccgcgtgctgtttaccgccgaatccgccgggcgccgtgaagtgctgctggagctg
ctggagcgcctgaagctgcggccgaaaaccgtcgacagctggccggacttcatcagcagc
aaagagcgcctggcgatcaccatcgcccccctggatgaaggcttgttgctggacgacccg
gccctggccctgatcgccgagagcccactgttcggccagcgcgtgatgcagcgtcgtcgc
cgtgaaaaacgcgccgacgccaacaacgacgcggtgatcaagaacctcacagagttgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtcggtcgctacctcggtttgcagacc
ctggagatcgataaccaggcagccgaattcctcaccatggaatacgccgagggcgccaaa
ctctacgtgccagtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcaccgctgcaccgcctgggctccgagacttggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgaactgctcgacatttatgcgcgccgcgcggcccgc
gaagggtatgcgttcgccgacccgaaagccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccagaccagcaaaccaccatcgaagcggtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtctgcggcgacgtaggcttcggcaaaaccgaagtggcc
atgcgcgccgcctttattgccgtgcacggcggccgccaagtggcgatcctggtaccgacc
acactgctcgcccagcagcactacaacagcttccgcgatcgctttgccgactggccggta
accgtcgaagtgatgagccgcttcaagtcggccaaggaagtgaacgcggccgtcgccgat
ttggccgaaggcaagatcgacatcgtgatcggcacccacaagctgctgtcggacgatgtg
aagatcaagaacctgggcctagtgatcatcgacgaagaacaccgctttggcgtacggcaa
aaagaacagctcaaggccctgcgcagtgaagtcgacattcttacgctcactgcaacgcca
atcccacgcaccctgaacatggccgtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgacgcctgtcggtgcgcaccttcgtcatggaacagaacaaaagcacggtc
aaagaagccctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggtgcccgaagcacgcatc
gccatcggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaataccatcatcatcgagcgcgccgacaagttcggcctggcgcaactgcatcag
ctgcgcggccgcgttgggcgcagtcaccaccaggcttatgcctacctgctgacgccgccg
cgccaacagatcacctccgacgcagaaaagcgcctggaagctatcgccaacacccaggac
ctgggcgcagggtttgtgctggccaccaacgacctcgaaatccgtggcgccggcgaactg
ctgggcgacggccagagcgggcagatccaggcggtgggtttcaccctttatatggaaatg
ctcgagcgcgccgtgaaagccatccgcaagggtgaacaaccgaacctcgaccaacccctg
ggcggtggcccggaaatcaacctgcgcctaccggccttgattcccgaagactatctgccc
gacgtgcacgcgcggctgatcctgtacaagcgcatcgcctcggccaccgacgaagaaggc
ctcaaggatttgcaggtcgagatgatcgaccgcttcggcctgctgccggaaccgaccaag
aaccttgtgcgcctgacgctgctcaaactgcaggccgagcagttgggaataaagaaagtc
gacgccgggcctcagggcgggcgtatcgagttcgaagcgcagacgccggtagatcccttg
gtgctgatcaagttgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaaattcatggtgccgatggaacgtgccgaagaacgcttcaataccctggaggcgttg
tttgagcgcctcattccgaaatctgtttga
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integrated database retrieval system
