Pseudomonas asiatica: LG197_02590
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Entry
LG197_02590 CDS
T08841
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pasi
Pseudomonas asiatica
Pathway
pasi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG197_02590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pasi03019
]
LG197_02590
Enzymes [BR:
pasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG197_02590
Messenger RNA biogenesis [BR:
pasi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG197_02590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WDM88993
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All DBs
Position
565996..567882
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AA seq
628 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTKQKIPDGDLMGFDASQVEAEKPEVRERQQNNGRGGRNQQARGDGGKDANGGR
KDKGKDKGKAKQQAADKPADKEKSGDKQQQQRKPRDKKPRQQQQQASNSSAPKVPVDRDP
EEFLDDDIDNFGNRADYVSPYQGKNQGRNRRPGANAGQGQGQGNGQRSNAGGQGRNSGQP
RSSGGGEKRPARANNGGGARRDGGGRGRPARDDAARQEPAVRNPRQPEKQPVIIRKESKL
DRYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tacacccagccgacccccgtgcaacagcgggcgattcccgccgtgttgcaaggccgcgac
ctgatggtcgccgcacagacaggtactggtaaaaccggcggtttcgccctgccgatcctc
gagcgcctgttcccggccggccaccccgacaagtcgcagcgccatggcccgcgccaacct
cgcgtgctggtcctgaccccgacccgcgaactggcagcccaggtgcatgacagcttcaag
gtctatgcccgtgacctgccactggtcagcgcctgcattttcggcggcgtcggcatgaac
ccgcagatccaggccattgccaagggtgtggacgtgctggtcgcctgcccgggccgcctg
ctcgacctggccggccaaggcaaggttgacctggcccacgtggaaatcctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtcctcgctcgc
ctgccggccaagcgccagaacctgttgttctcggccacgttctccaaggacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgtatcgaggtcaccccgccgaacactacc
gtcgagcgtatcgagcagcgcgtctaccgcctgcccgccagccacaagcgcgcgctgctg
gcgcacctgatcacccagggtgcctgggaacaggtactggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggaaaagcacggcctgaccgccgccgcaattcat
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccaacagcgtg
cgcgtactggtcgccaccgacatcgccgcccgtggcctggacatcgaccagctgccgcac
gtggtcaatttcgagctgccgaacgtagaggaagactacgtccaccgtatcggccgtacc
ggccgtgccgggcgttcaggcgaggccatttccatggtcgcgccggatgaagagaaactg
ctcaagagcatcgagcgggtaaccaagcagaagattcctgacggcgacctgatgggtttc
gacgccagccaggttgaagcagaaaagcctgaagtacgcgaacgccagcagaacaatggc
cgtggtggccgtaaccagcaagcccgcggcgacggcggcaaagacgccaacggcggccgc
aaggacaagggcaaggataaaggcaaggccaagcaacaggctgcggacaagccggccgac
aaggaaaagagcggcgacaagcaacagcagcaacgcaagccgcgtgacaagaagccacgc
cagcagcaacagcaggccagcaacagcagtgcgccgaaagtgcctgtcgaccgtgatccg
gaagagttcctggacgacgatatcgacaacttcggcaaccgtgccgactatgtcagcccg
taccagggcaagaaccagggccgcaatcgccgcccgggtgccaatgccggccaaggtcag
ggccagggtaatggccagcgcagcaacgccggtggccagggtcgcaatagcggccagccg
cgcagcagcggtggcggcgagaaacgtccggcccgcgccaataatggtggcggcgcccgt
cgtgatggtggcggccgtggtcgcccggcccgtgacgatgctgcacggcaagagccggcc
gtgcgcaacccgcgccagccggaaaaacagccagtgatcatccgcaaggagtccaagctc
gaccgttacccgacgccagagcagctggatgacctgccgagccgcccgcgcggtgagcgc
ccggcgctgttgacccgcaagggctga
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