Pseudomonas asiatica: LG197_13630
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Entry
LG197_13630 CDS
T08841
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pasi
Pseudomonas asiatica
Pathway
pasi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LG197_13630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pasi03400
]
LG197_13630 (mfd)
Enzymes [BR:
pasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LG197_13630 (mfd)
DNA repair and recombination proteins [BR:
pasi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LG197_13630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WDM91032
LinkDB
All DBs
Position
complement(2979441..2982890)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPT
RFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSTEDLDPGVGRERFPARALPNL
AIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVDGWADFITG
SERLAITIAPLDEGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVANAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKV
DAGPNGGKIEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaat
ctacccggtgccgccctcagcctggccatcgccgaggccgccagcagcgcgggccgcttc
actttgctgctgactgccgacagccaggctgccgatcgtctggaacaggaacttcgcttc
tttgccccggacctgccggtgctgccgttccctgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctctaccgcctgcccgag
ctgagccacggcatcctcgtggtgccggtcaccaccgccctgcaccgcctggcgccgacc
cgcttcctgctgggcagcagcctggtgctggacgtgggccagaccatcgacgtggagcaa
atgcgcctgcgcctggaggccagtggctatcgctgcgtcgacaccgtctacgagcatggc
gagttcgccgtgcgcggcgcgttgatcgacctgttcccgatgggcagcaagctgccctac
cgtatcgacctgttcgatgacgagatcgagacgctgcgcaccttcgaccccgagacccag
cgctcgatcgacaaggtggattcggtgcgcctgctgccggcgcgcgagttcccgatgcag
aaagaggaagtgacccgcttcaaggcgcgcttccgcgagcgcttcgatgtcgacttccgc
cgcagcgcgatcttccaggacctggccagcggcatcatccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgactacctgccggccgacacccag
gtgttctcgctgcccggcgtggaacaggccgccgaacacttctggaacgacgtgcgcggg
cgttatgaagaccgccgtggcgacctgagccggccgctgctgccgccggccgagctgttc
ctgccggtggaagactgctttgcccggctcaagcaatggccacgggtagtggtcagcacc
gaagacctcgacccgggcgtgggtcgcgagcgcttcccggcacgcgccctgcccaacctg
gcaatcgaagccaaggccaaccagcccctggccgaactggccaacttcctcgaccagttc
cccggccgggtgttgttcaccgccgaatcggcgggccgccgcgaagtgctgctggagctg
ctcgagcggctgaaactgcgcccgcataccgtcgacggctgggccgacttcatcaccggc
agcgaacgcctggcaatcaccatcgccccactggacgaaggcctgctgctggacgaccca
ggcctggccctgatcgccgaaagcccgctgttcggccagcgggtcatgcagcgccggcgc
cgcgacaagcgcggcgaaaccgccaacgacgcggtgatcaagaacctgaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccatggtgtgggccgttacctgggcctggccacc
ctggaaatcgacggccaggccgccgaattcctcaccctggagtatgccgagggtgccaag
ctgtacgtgccggtggccaacctgcacctgatcgcccgctacactggcagcgacgatgcc
ctggcaccgctgcaccggctgggctcggaggcctggcagaaggccaagcgcaaggccgcc
gaacaagtgcgcgacgtcgccgccgaactgctcgatatctatgcccgccgcgccgcgcgc
aaaggctatgcatttgccgacccgtccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaaccccggatcaacaggctgccatcgaagccgtgcgtgccgacatgctggcg
cccaagccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaagtcgcc
atgcgcgcagcgttcatcgccgtacacagcggccgccaggtggccgtgctggtacccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaggtgatgagccgcttcaagtcggccaaggaagtggccaacgccgccgccgag
ctggccgaaggcaagatcgacatccttatcggcacccacaagctgctgcaggacgatgta
cgcttcaaggaccttggcctggccatcatcgacgaagagcaccgctttggcgtgcgccag
aaggaacagctcaaggccctgcgcagcgaagtggacatcctcaccctcaccgccacgccg
atcccgcgtaccctgaacatggcggtggcgggcatgcgcgacctgtcgatcatcgccacg
ccaccggcgcgccgcctgtcggtacgcaccttcgtcatggagcagaacaagagcacggtc
aaggaggcgctgctgcgcgagctgctgcgcggtggccaggtgtactacctgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgaccttgccgaactggtgccagaggcgcgcatc
ggcatcggccacgggcagatgcgcgagcgcgagctggaacaggtgatgagcgatttctac
cacaagcgcttcaacgtgctggtggcctcgaccatcatcgaaaccggcatcgacgtgccc
agcgccaacacgatcgtcatcgagcgtgccgacaagttcggcctggcccagctgcaccag
ttgcgcggccgtgttggccgaagccaccaccaggcctacgcctacttgctgacgccaacc
cggcagaaggtcagcgccgacgccgaaaaacgcctggaggcgatcgccaacacccaggac
ctcggtgccggcttcgtgctggccaccaacgacctggagattcgcggcgccggtgagttg
ctgggcgaaggccagagcgggcagatccaggcggtgggctttaccttgtacatggaaatg
ctcgaacgcgcggtcaaggcgatccgcaagggcacccagcccaaccttgagcagccgctg
ggcggcggaccggaaatcaacctgcgcctgccggcactgatccccgaggactacctgccc
gacgtgcatgcacggctgatcctgtacaagcgcattgcctcggctgccgatgaagaaggc
ctcaaggacctgcaggtggaaatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatgcgcctgacctcgctcaagctgcacgcggaaaagctcggcatcaagaaagtc
gacgccggccccaacggcggcaagatcgagttcgaggccgagaccccggtcgacccgctg
accctgatcaagctgattcagggccagcccaaacgctacaagttcgaaggcgccacccag
ttccgtttcctggtgcccatggaacgccccgacgaacgtttcaataccctggaggcgctg
ttcgagcgcctgaccccacagcctgcctaa
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