Pseudomonas atacamensis: JWU58_11345
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Entry
JWU58_11345 CDS
T07336
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JWU58_11345 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_11345 (ligD)
Enzymes [BR:
pata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JWU58_11345 (ligD)
DNA repair and recombination proteins [BR:
pata03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JWU58_11345 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QSL89859
LinkDB
All DBs
Position
2473361..2475985
Genome browser
AA seq
874 aa
AA seq
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MNRNLDDYNRMRDFSATSEPAAVKRSGRKSAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPSVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKSAAAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGDIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
KESSTLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLQTKSAA
VVNPPSGFEAKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKSEKNEKTEKTKTADKQPAKKTAASKKAETAPSQSGLAGGKVRITHPDRVIDAVSGT
TKMQLAQYYASVAEYILPQLKDRPVALVRAPDGIAGELFFQKNADRLAIPGITALDKDVT
GQPVMMINNPEALVGAVQMSTVELHTWNATKVDLDKPDRFVLDLDPDPALPWKSMVEATA
LTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRISAV
SGPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNIYNV
HERLTEVGDEPWADMKKTRQTITAEMRKRVGMKK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaacctcgacgattacaaccgcatgcgtgatttttccgcgacgtcggaaccg
gccgcagtcaagcgctcgggccgtaagtcggccaaggatcatgcgttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgcctggaactcgacggcgcgctg
aaaagctgggcggtgccgaaggggccgtcgctggacccgtcggtcaagcgtctggcgatt
catgtcgaggatcatccgctcgattacgcgacgttcgaaggcagcattcccgaggggcat
tacggcgccggtgatgtgatcgtctgggatcgcggcgtgtggattccgctggaggatccg
cacaaggcctatgccaagggccgactgaagttcgagctgcagggcgagaagctcggcggc
gtgtggaatctggtgcgcacgcacatgccgggcaagaaagaacaatggttcctgatcaag
catcaggacaacgccgcgcgaccgcaggatgatttcgacgtgctggtcgccgagcccgac
agcgtgctcagcgagcgcacgattgttggcaaatcggcggctgccgccgataaggccaaa
ccggtgaaaaaggccccggccaagccgcgcaagcaggcgtccgggcagctcaccggcgcg
cgcaaggccaagttgccggcactgatcaagccggaactggcgacgctggtcgacagcgca
cccgaagggcagtggagctacgagatcaagttcgacggctaccggatcatggcgcggatc
gatcacgatgaggtgcagctgttcacccgcaatggtcacgactggacgcacaagctgccg
cagcaggccaaggcgctggcggcattgggtctggaatcggcgtggcttgacggtgaaatg
gtcgtggccaatgagcaaggcgtgccggactttcaggcgttgcagaatgcgttcgatgcc
gggcgcagcggcgacattgtttattacctgttcgacgtgccgtatctgaatggcgtcgac
ctgcgcgatgtgccggtggaagaacgccgcgctgcgctgagcaccatcctcggtgcgcag
aaagaatcctcaacgctgcgcttctccgaagccttcgaagaaaccccggacgcgctgctc
aacagcgcttgccagatgcagatggaaggcctgatcggcaagcggctcggctcgccttac
gtgtctcggcgcagcggcgactggatcaagctcaaatgcaagcatcgccaggaattcgtc
atcgtcggctacaccgatccgaaaggtgcgcgcagtgctttcggtgccttgctgctcggc
ctgcacgaccgtgacagcggcgagttgcgctatgccggcaaggtcggcaccgggttcaac
gaaaccacattgaaaagcatcctcgcccaactcaagccgttgcagaccaaaagcgccgca
gtggtcaatccgcccagcggtttcgaggcaaaaggcgtgcactggctcaaacccaaactg
ctggccgaagtggcattcgccgagatgaccaaggacggctcggtgcgccacgccgtgttc
catggtttgcgcgatgacaaaccggccaaggacattaccgaggagcgagcgaagcctgtg
aaagctgccaagtccgaaaagaacgaaaaaaccgaaaagaccaaaaccgccgacaagcag
ccggcaaagaaaaccgccgccagcaaaaaagccgagaccgcaccgtcgcaatcaggactg
gccggcggcaaggtacgcatcacccatccggatcgggtgattgacgccgtcagtggcacg
accaaaatgcaactggcgcagtactacgccagtgtcgccgaatacatcctgccgcaactc
aaggatcgccccgtggcgttggtgcgtgcaccggacggcattgccggcgaattgttcttc
caaaagaacgccgatcgcctggccattcccggtatcactgctctggacaaggacgtcacc
ggccagccagtgatgatgatcaacaatcccgaagcgctggtcggcgcggtgcagatgagt
accgtcgagctgcacacctggaacgcgacgaaggtggatctggacaagcctgatcgcttc
gtcctcgacctcgacccggatccggcgctgccatggaagagcatggttgaagccaccgcg
ctgaccctcactgtgctagatgagctgggccttaaagccttcctgaaaaccagcggcggc
aaaggcattcacctggtggtgccattgacccgcaagcatggctgggacgaagtgaaggac
ttcagccacgccatcgtcagccacatggccaagttgctgccggatcgtatttcagcggtg
tccgggccgaaaaaccgcgtcgggcggatcttcatcgattacctgcgcaacggcctcggc
gccaccaccatttgcgcttacgccgcacgcgcgcgggaaggcatgccggtgtcggtgccg
ctgtaccgagaggaagtcgctgaaatcaagggcggtaatcactggaacatctacaacgtt
cacgagcgtctgaccgaagtcggtgatgagccttgggcggacatgaagaaaacccgtcag
accatcaccgccgagatgcgcaaacgcgtcggcatgaaaaagtga
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