KEGG   Pseudomonas atacamensis: JWU58_11345
Entry
JWU58_11345       CDS       T07336                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pata  Pseudomonas atacamensis
Pathway
pata03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pata00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    JWU58_11345 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pata03400]
    JWU58_11345 (ligD)
Enzymes [BR:pata01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     JWU58_11345 (ligD)
DNA repair and recombination proteins [BR:pata03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     JWU58_11345 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: QSL89859
LinkDB
Position
2473361..2475985
AA seq 874 aa
MNRNLDDYNRMRDFSATSEPAAVKRSGRKSAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPSVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKSAAAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGDIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
KESSTLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLQTKSAA
VVNPPSGFEAKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKSEKNEKTEKTKTADKQPAKKTAASKKAETAPSQSGLAGGKVRITHPDRVIDAVSGT
TKMQLAQYYASVAEYILPQLKDRPVALVRAPDGIAGELFFQKNADRLAIPGITALDKDVT
GQPVMMINNPEALVGAVQMSTVELHTWNATKVDLDKPDRFVLDLDPDPALPWKSMVEATA
LTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRISAV
SGPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNIYNV
HERLTEVGDEPWADMKKTRQTITAEMRKRVGMKK
NT seq 2625 nt   +upstreamnt  +downstreamnt
atgaacaggaacctcgacgattacaaccgcatgcgtgatttttccgcgacgtcggaaccg
gccgcagtcaagcgctcgggccgtaagtcggccaaggatcatgcgttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgcctggaactcgacggcgcgctg
aaaagctgggcggtgccgaaggggccgtcgctggacccgtcggtcaagcgtctggcgatt
catgtcgaggatcatccgctcgattacgcgacgttcgaaggcagcattcccgaggggcat
tacggcgccggtgatgtgatcgtctgggatcgcggcgtgtggattccgctggaggatccg
cacaaggcctatgccaagggccgactgaagttcgagctgcagggcgagaagctcggcggc
gtgtggaatctggtgcgcacgcacatgccgggcaagaaagaacaatggttcctgatcaag
catcaggacaacgccgcgcgaccgcaggatgatttcgacgtgctggtcgccgagcccgac
agcgtgctcagcgagcgcacgattgttggcaaatcggcggctgccgccgataaggccaaa
ccggtgaaaaaggccccggccaagccgcgcaagcaggcgtccgggcagctcaccggcgcg
cgcaaggccaagttgccggcactgatcaagccggaactggcgacgctggtcgacagcgca
cccgaagggcagtggagctacgagatcaagttcgacggctaccggatcatggcgcggatc
gatcacgatgaggtgcagctgttcacccgcaatggtcacgactggacgcacaagctgccg
cagcaggccaaggcgctggcggcattgggtctggaatcggcgtggcttgacggtgaaatg
gtcgtggccaatgagcaaggcgtgccggactttcaggcgttgcagaatgcgttcgatgcc
gggcgcagcggcgacattgtttattacctgttcgacgtgccgtatctgaatggcgtcgac
ctgcgcgatgtgccggtggaagaacgccgcgctgcgctgagcaccatcctcggtgcgcag
aaagaatcctcaacgctgcgcttctccgaagccttcgaagaaaccccggacgcgctgctc
aacagcgcttgccagatgcagatggaaggcctgatcggcaagcggctcggctcgccttac
gtgtctcggcgcagcggcgactggatcaagctcaaatgcaagcatcgccaggaattcgtc
atcgtcggctacaccgatccgaaaggtgcgcgcagtgctttcggtgccttgctgctcggc
ctgcacgaccgtgacagcggcgagttgcgctatgccggcaaggtcggcaccgggttcaac
gaaaccacattgaaaagcatcctcgcccaactcaagccgttgcagaccaaaagcgccgca
gtggtcaatccgcccagcggtttcgaggcaaaaggcgtgcactggctcaaacccaaactg
ctggccgaagtggcattcgccgagatgaccaaggacggctcggtgcgccacgccgtgttc
catggtttgcgcgatgacaaaccggccaaggacattaccgaggagcgagcgaagcctgtg
aaagctgccaagtccgaaaagaacgaaaaaaccgaaaagaccaaaaccgccgacaagcag
ccggcaaagaaaaccgccgccagcaaaaaagccgagaccgcaccgtcgcaatcaggactg
gccggcggcaaggtacgcatcacccatccggatcgggtgattgacgccgtcagtggcacg
accaaaatgcaactggcgcagtactacgccagtgtcgccgaatacatcctgccgcaactc
aaggatcgccccgtggcgttggtgcgtgcaccggacggcattgccggcgaattgttcttc
caaaagaacgccgatcgcctggccattcccggtatcactgctctggacaaggacgtcacc
ggccagccagtgatgatgatcaacaatcccgaagcgctggtcggcgcggtgcagatgagt
accgtcgagctgcacacctggaacgcgacgaaggtggatctggacaagcctgatcgcttc
gtcctcgacctcgacccggatccggcgctgccatggaagagcatggttgaagccaccgcg
ctgaccctcactgtgctagatgagctgggccttaaagccttcctgaaaaccagcggcggc
aaaggcattcacctggtggtgccattgacccgcaagcatggctgggacgaagtgaaggac
ttcagccacgccatcgtcagccacatggccaagttgctgccggatcgtatttcagcggtg
tccgggccgaaaaaccgcgtcgggcggatcttcatcgattacctgcgcaacggcctcggc
gccaccaccatttgcgcttacgccgcacgcgcgcgggaaggcatgccggtgtcggtgccg
ctgtaccgagaggaagtcgctgaaatcaagggcggtaatcactggaacatctacaacgtt
cacgagcgtctgaccgaagtcggtgatgagccttgggcggacatgaagaaaacccgtcag
accatcaccgccgagatgcgcaaacgcgtcggcatgaaaaagtga

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