KEGG   PATHWAY: aasc00020
Entry
aasc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acetobacter ascendens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aasc00020  Citrate cycle (TCA cycle)
aasc00020

Module
aasc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aasc00020]
aasc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aasc00020]
aasc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aasc00020]
aasc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aasc00020]
Other DBs
GO: 0006099
Organism
Acetobacter ascendens [GN:aasc]
Gene
A4S02_03295  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A4S02_13295  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A4S02_01120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A4S02_03170  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
A4S02_01870  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A4S02_01875  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A4S02_04045  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A4S02_01880  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A4S02_03315  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
A4S02_12360  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A4S02_12365  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A4S02_12350  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A4S02_12355  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A4S02_13380  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A4S02_05325  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A4S02_03730  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A4S02_04060  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A4S02_04055  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
A4S02_04050  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
A4S02_00960  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
A4S02_05465  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aasc00010  Glycolysis / Gluconeogenesis
aasc00053  Ascorbate and aldarate metabolism
aasc00061  Fatty acid biosynthesis
aasc00071  Fatty acid degradation
aasc00190  Oxidative phosphorylation
aasc00220  Arginine biosynthesis
aasc00250  Alanine, aspartate and glutamate metabolism
aasc00280  Valine, leucine and isoleucine degradation
aasc00350  Tyrosine metabolism
aasc00470  D-Amino acid metabolism
aasc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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