KEGG   PATHWAY: agr01100
Entry
agr01100                    Pathway                                
Name
Metabolic pathways - Agrobacterium tumefaciens H13-3
Class
Pathway map
agr01100  Metabolic pathways
agr01100

Module
agr_M00002  Glycolysis, core module involving three-carbon compounds [PATH:agr01100]
agr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:agr01100]
agr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:agr01100]
agr_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:agr01100]
agr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:agr01100]
agr_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:agr01100]
agr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:agr01100]
agr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:agr01100]
agr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:agr01100]
agr_M00012  Glyoxylate cycle [PATH:agr01100]
agr_M00015  Proline biosynthesis, glutamate => proline [PATH:agr01100]
agr_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:agr01100]
agr_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:agr01100]
agr_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:agr01100]
agr_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:agr01100]
agr_M00021  Cysteine biosynthesis, serine => cysteine [PATH:agr01100]
agr_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:agr01100]
agr_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:agr01100]
agr_M00026  Histidine biosynthesis, PRPP => histidine [PATH:agr01100]
agr_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:agr01100]
agr_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:agr01100]
agr_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:agr01100]
agr_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:agr01100]
agr_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:agr01100]
agr_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:agr01100]
agr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:agr01100]
agr_M00082  Fatty acid biosynthesis, initiation [PATH:agr01100]
agr_M00083  Fatty acid biosynthesis, elongation [PATH:agr01100]
agr_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:agr01100]
agr_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:agr01100]
agr_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:agr01100]
agr_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:agr01100]
agr_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:agr01100]
agr_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:agr01100]
agr_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:agr01100]
agr_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:agr01100]
agr_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:agr01100]
agr_M00149  Succinate dehydrogenase, prokaryotes [PATH:agr01100]
agr_M00151  Cytochrome bc1 complex respiratory unit [PATH:agr01100]
agr_M00155  Cytochrome c oxidase, prokaryotes [PATH:agr01100]
agr_M00156  Cytochrome c oxidase, cbb3-type [PATH:agr01100]
agr_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:agr01100]
agr_M00169  CAM (Crassulacean acid metabolism), light [PATH:agr01100]
agr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:agr01100]
agr_M00417  Cytochrome o ubiquinol oxidase [PATH:agr01100]
agr_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:agr01100]
agr_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:agr01100]
agr_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:agr01100]
agr_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:agr01100]
agr_M00555  Betaine biosynthesis, choline => betaine [PATH:agr01100]
agr_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:agr01100]
agr_M00621  Glycine cleavage system [PATH:agr01100]
agr_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:agr01100]
agr_M00793  dTDP-L-rhamnose biosynthesis [PATH:agr01100]
agr_M00844  Arginine biosynthesis, ornithine => arginine [PATH:agr01100]
agr_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:agr01100]
agr_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:agr01100]
agr_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:agr01100]
agr_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:agr01100]
agr_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:agr01100]
agr_M00919  Ectoine degradation, ectoine => aspartate [PATH:agr01100]
agr_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:agr01100]
agr_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:agr01100]
agr_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:agr01100]
agr_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:agr01100]
agr_M00970  Proline degradation, proline => glutamate [PATH:agr01100]
agr_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:agr01100]
Organism
Agrobacterium tumefaciens H13-3 [GN:agr]
Related
pathway
agr00010  Glycolysis / Gluconeogenesis
agr00020  Citrate cycle (TCA cycle)
agr00030  Pentose phosphate pathway
agr00040  Pentose and glucuronate interconversions
agr00051  Fructose and mannose metabolism
agr00052  Galactose metabolism
agr00053  Ascorbate and aldarate metabolism
agr00061  Fatty acid biosynthesis
agr00071  Fatty acid degradation
agr00130  Ubiquinone and other terpenoid-quinone biosynthesis
agr00190  Oxidative phosphorylation
agr00220  Arginine biosynthesis
agr00230  Purine metabolism
agr00240  Pyrimidine metabolism
agr00250  Alanine, aspartate and glutamate metabolism
agr00260  Glycine, serine and threonine metabolism
agr00261  Monobactam biosynthesis
agr00270  Cysteine and methionine metabolism
agr00280  Valine, leucine and isoleucine degradation
agr00290  Valine, leucine and isoleucine biosynthesis
agr00300  Lysine biosynthesis
agr00310  Lysine degradation
agr00311  Penicillin and cephalosporin biosynthesis
agr00330  Arginine and proline metabolism
agr00332  Carbapenem biosynthesis
agr00340  Histidine metabolism
agr00350  Tyrosine metabolism
agr00360  Phenylalanine metabolism
agr00361  Chlorocyclohexane and chlorobenzene degradation
agr00362  Benzoate degradation
agr00364  Fluorobenzoate degradation
agr00380  Tryptophan metabolism
agr00400  Phenylalanine, tyrosine and tryptophan biosynthesis
agr00401  Novobiocin biosynthesis
agr00410  beta-Alanine metabolism
agr00430  Taurine and hypotaurine metabolism
agr00440  Phosphonate and phosphinate metabolism
agr00450  Selenocompound metabolism
agr00460  Cyanoamino acid metabolism
agr00470  D-Amino acid metabolism
agr00480  Glutathione metabolism
agr00500  Starch and sucrose metabolism
agr00511  Other glycan degradation
agr00520  Amino sugar and nucleotide sugar metabolism
agr00521  Streptomycin biosynthesis
agr00523  Polyketide sugar unit biosynthesis
agr00525  Acarbose and validamycin biosynthesis
agr00540  Lipopolysaccharide biosynthesis
agr00541  O-Antigen nucleotide sugar biosynthesis
agr00542  O-Antigen repeat unit biosynthesis
agr00543  Exopolysaccharide biosynthesis
agr00550  Peptidoglycan biosynthesis
agr00552  Teichoic acid biosynthesis
agr00561  Glycerolipid metabolism
agr00562  Inositol phosphate metabolism
agr00564  Glycerophospholipid metabolism
agr00600  Sphingolipid metabolism
agr00620  Pyruvate metabolism
agr00622  Xylene degradation
agr00623  Toluene degradation
agr00625  Chloroalkane and chloroalkene degradation
agr00626  Naphthalene degradation
agr00627  Aminobenzoate degradation
agr00630  Glyoxylate and dicarboxylate metabolism
agr00633  Nitrotoluene degradation
agr00640  Propanoate metabolism
agr00643  Styrene degradation
agr00650  Butanoate metabolism
agr00660  C5-Branched dibasic acid metabolism
agr00670  One carbon pool by folate
agr00680  Methane metabolism
agr00730  Thiamine metabolism
agr00740  Riboflavin metabolism
agr00750  Vitamin B6 metabolism
agr00760  Nicotinate and nicotinamide metabolism
agr00770  Pantothenate and CoA biosynthesis
agr00780  Biotin metabolism
agr00785  Lipoic acid metabolism
agr00790  Folate biosynthesis
agr00860  Porphyrin metabolism
agr00900  Terpenoid backbone biosynthesis
agr00903  Limonene degradation
agr00906  Carotenoid biosynthesis
agr00907  Pinene, camphor and geraniol degradation
agr00910  Nitrogen metabolism
agr00920  Sulfur metabolism
agr00930  Caprolactam degradation
agr00946  Degradation of flavonoids
agr00999  Biosynthesis of various plant secondary metabolites
agr01040  Biosynthesis of unsaturated fatty acids
agr01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
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