KEGG   PATHWAY: aje03040
Entry
aje03040                    Pathway                                
Name
Spliceosome - Histoplasma mississippiense
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
aje03040  Spliceosome
aje03040

Other DBs
GO: 0005681
Organism
Histoplasma mississippiense [GN:aje]
Gene
HCAG_03356  hypothetical protein [KO:K12811] [EC:5.6.2.7]
HCAG_05061  ATP-dependent RNA helicase SUB2 [KO:K12812] [EC:5.6.2.7]
HCAG_07426  similar to ATP dependent helicase [KO:K12813] [EC:5.6.2.6]
HCAG_04602  pre-mRNA splicing factor ATP-dependent RNA helicase prp16 [KO:K12815] [EC:5.6.2.6]
HCAG_07796  hypothetical protein [KO:K12816]
HCAG_02132  hypothetical protein [KO:K12817]
HCAG_00961  ATP-dependent RNA helicase DHX8 [KO:K12818] [EC:5.6.2.6]
HCAG_01160  hypothetical protein [KO:K12819]
HCAG_00841  pre-mRNA splicing factor ATP-dependent RNA helicase PRP43 [KO:K12820] [EC:5.6.2.6]
HCAG_04232  hypothetical protein [KO:K11086]
HCAG_03703  hypothetical protein [KO:K11087]
HCAG_02553  small nuclear ribonucleoprotein Sm D2 [KO:K11096]
HCAG_01311  hypothetical protein [KO:K11088]
HCAG_01049  hypothetical protein [KO:K11098]
HCAG_02780  small nuclear ribonucleoprotein SmG [KO:K11099]
HCAG_02503  hypothetical protein [KO:K11093]
HCAG_03382  hypothetical protein [KO:K12821]
HCAG_08709  similar to DEAD box polypeptide 17 isoform 2 [KO:K12823] [EC:5.6.2.7]
HCAG_00910  small nuclear ribonucleoprotein U2A' [KO:K11092]
HCAG_04114  hypothetical protein [KO:K11094]
HCAG_02639  hypothetical protein [KO:K11094]
HCAG_01196  hypothetical protein [KO:K12825]
HCAG_01502  hypothetical protein [KO:K12826]
HCAG_00407  hypothetical protein [KO:K12827]
HCAG_04631  U2 snRNP component HSH155 [KO:K12828]
HCAG_06918  hypothetical protein [KO:K12829]
HCAG_05023  hypothetical protein [KO:K12829]
HCAG_05173  hypothetical protein [KO:K12830]
HCAG_06893  similar to splicing factor 3b [KO:K12831]
HCAG_00207  splicing factor 3B subunit 10 SF3b10 [KO:K12832]
HCAG_03657  hypothetical protein [KO:K12833]
HCAG_06537  pre-mRNA splicing factor ini1 [KO:K12834]
HCAG_04463  splicing factor U2AF 35 kDa subunit [KO:K12836]
HCAG_04655  hypothetical protein [KO:K12837]
HCAG_05784  hypothetical protein [KO:K12839]
HCAG_00130  hypothetical protein [KO:K12842]
HCAG_08281  small nuclear ribonucleoprotein LSM2 [KO:K12621]
HCAG_02564  hypothetical protein [KO:K12622]
HCAG_03909  similar to glycine-rich protein [KO:K12623]
HCAG_06383  hypothetical protein [KO:K12624]
HCAG_04071  similar to U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
HCAG_02332  hypothetical protein [KO:K12626]
HCAG_01854  hypothetical protein [KO:K12627]
HCAG_06713  hypothetical protein [KO:K12843]
HCAG_02738  hypothetical protein [KO:K12662]
HCAG_01870  peptidyl-prolyl cis-trans isomerase [KO:K09567] [EC:5.2.1.8]
HCAG_04171  small nucleolar ribonucleoprotein SNU13 [KO:K12845]
HCAG_05144  hypothetical protein [KO:K12846]
HCAG_04199  hypothetical protein [KO:K12847]
HCAG_06101  hypothetical protein [KO:K11984]
HCAG_00661  hypothetical protein [KO:K12849]
HCAG_00813  116 kDa U5 small nuclear ribonucleoprotein component [KO:K12852]
HCAG_03643  pre-mRNA splicing factor prp1 [KO:K12855]
HCAG_04562  pre-mRNA processing splicing factor 8 [KO:K12856]
HCAG_04402  hypothetical protein [KO:K12857]
HCAG_07085  similar to U5 snRNP 100 kD protein [KO:K12858] [EC:5.6.2.7]
HCAG_04226  mitosis protein dim1 [KO:K12859]
HCAG_02506  hypothetical protein [KO:K10599] [EC:2.3.2.27]
HCAG_00976  pre-mRNA splicing factor cef-1 [KO:K12860]
HCAG_05496  hypothetical protein [KO:K12861]
HCAG_03437  pre-mRNA splicing factor prp46 [KO:K12862]
HCAG_07308  hypothetical protein [KO:K12863]
HCAG_00806  heat shock 70 kDa protein [KO:K03283]
HCAG_00461  hypothetical protein [KO:K06063]
HCAG_02641  pre-mRNA splicing factor syf-1 [KO:K12867]
HCAG_01349  hypothetical protein [KO:K12868]
HCAG_03195  peptidyl-prolyl cis-trans isomerase cypE [KO:K12733] [EC:5.2.1.8]
HCAG_01952  hypothetical protein [KO:K12871]
HCAG_07565  pre-mRNA splicing factor slt-11 [KO:K12872]
HCAG_03057  cell cycle control protein cwf14 [KO:K12873]
HCAG_07757  hypothetical protein [KO:K12874]
HCAG_00406  eukaryotic initiation factor 4A-12 [KO:K13025] [EC:5.6.2.7]
HCAG_04531  hypothetical protein [KO:K12876]
HCAG_01815  mago nashi protein [KO:K12877]
HCAG_07756  hypothetical protein [KO:K12878]
HCAG_02921  hypothetical protein [KO:K12879]
HCAG_02920  hypothetical protein [KO:K12879]
HCAG_01475  hypothetical protein [KO:K12880]
HCAG_08343  hypothetical protein [KO:K12881]
HCAG_00740  hypothetical protein [KO:K12881]
HCAG_08342  hypothetical protein [KO:K12881]
HCAG_06885  hypothetical protein [KO:K12882]
HCAG_07341  nuclear cap binding protein subunit 2 [KO:K12883]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   
LinkDB

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