KEGG   PATHWAY: amex04622
Entry
amex04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Astyanax mexicanus (Mexican tetra)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
amex04622  RIG-I-like receptor signaling pathway
amex04622

Organism
Astyanax mexicanus (Mexican tetra) [GN:amex]
Gene
103047126  ddx58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
103026821  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
103037515  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
103043870  mavs; LOW QUALITY PROTEIN: mitochondrial antiviral-signaling protein [KO:K12648]
103032392  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
103023640  traf3; LOW QUALITY PROTEIN: TNF receptor-associated factor 3 [KO:K03174]
103024976  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
111188589  azi2; 5-azacytidine-induced protein 2 [KO:K12651]
103039109  TANK-binding kinase 1-binding protein 1-like [KO:K12652]
103045807  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
103043929  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
103023014  tbk1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
103047687  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
103032028  interferon regulatory factor 3-like [KO:K05411]
103045043  irf7; interferon regulatory factor 7 isoform X1 [KO:K09447]
103031198  interferon a3-like [KO:K05414]
111197617  interferon alpha-3-like [KO:K05414]
111196927  interferon tau-1-like [KO:K05414]
103022233  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
103022073  fadd; FAS-associated death domain protein [KO:K02373]
103045920  ripk1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
103021896  caspase-8-like [KO:K04398] [EC:3.4.22.61]
103036076  caspase-8-like [KO:K04398] [EC:3.4.22.61]
103036379  caspase-8-like [KO:K04398] [EC:3.4.22.61]
103037118  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
103035342  caspase-8-like [KO:K04400] [EC:3.4.22.63]
103033415  chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
103040024  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
103038271  NF-kappa-B inhibitor alpha [KO:K04734]
103043190  nfkbia; NF-kappa-B inhibitor alpha isoform X1 [KO:K04734]
103038869  nfkb1; nuclear factor NF-kappa-B p105 subunit [KO:K02580]
103032041  putative transcription factor p65 homolog [KO:K04735]
103036375  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
103028261  traf2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
103039333  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
103021325  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
103042517  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
103043065  LOW QUALITY PROTEIN: mitogen-activated protein kinase 10-like [KO:K04440] [EC:2.7.11.24]
103040580  mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
103035319  mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
103034138  mitogen-activated protein kinase 8A isoform X1 [KO:K04440] [EC:2.7.11.24]
103035641  mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
103035956  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
103046996  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
103028137  mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
103042110  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
103043112  LOW QUALITY PROTEIN: mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
103040333  mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
103036120  interleukin-8-like [KO:K10030]
103026712  interleukin-8-like [KO:K10030]
103036419  interleukin-8-like [KO:K10030]
103036716  interleukin-8-like [KO:K10030]
103029988  cxcl13; C-X-C motif chemokine 13 [KO:K10030]
103032568  tumor necrosis factor-like [KO:K03156]
107197652  interleukin-12 subunit alpha-like [KO:K05406]
103025849  interleukin-12 subunit alpha [KO:K05406]
103041682  interleukin-12 subunit beta [KO:K05425]
103036896  interleukin-12 subunit beta-like [KO:K05425]
103028022  uncharacterized protein LOC103028022 [KO:K05425]
103028720  C-X-C motif chemokine 11-6-like [KO:K12671]
103023414  adar; LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
103043961  trim25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
103047330  tripartite motif-containing protein 16-like isoform X1 [KO:K10652] [EC:2.3.2.27]
111194825  tripartite motif-containing protein 65-like isoform X1 [KO:K10652] [EC:2.3.2.27]
103024812  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
103027716  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
103033504  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
103044817  cyld; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
103030888  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
103047871  atg5; autophagy protein 5 isoform X1 [KO:K08339]
103033439  atg12; ubiquitin-like protein ATG12 [KO:K08336]
103033359  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
103043645  tmem173; stimulator of interferon genes protein [KO:K12654]
103035418  otud5; OTU domain-containing protein 5 [KO:K12655] [EC:3.4.19.12]
103021829  sike1; suppressor of IKBKE 1 [KO:K12656]
103040126  ddx3x; ATP-dependent RNA helicase DDX3X isoform X9 [KO:K11594] [EC:5.6.2.7]
103046038  putative ATP-dependent RNA helicase an3 isoform X1 [KO:K11594] [EC:5.6.2.7]
103047339  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
103037716  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
amex04010  MAPK signaling pathway
amex04120  Ubiquitin mediated proteolysis
amex04210  Apoptosis
KO pathway
ko04622   
LinkDB

DBGET integrated database retrieval system