KEGG   PATHWAY: aqu04137
Entry
aqu04137                    Pathway                                
Name
Mitophagy - animal - Amphimedon queenslandica (sponge)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
aqu04137  Mitophagy - animal
aqu04137

Other DBs
GO: 0000422
Organism
Amphimedon queenslandica (sponge) [GN:aqu]
Gene
100631577  uncharacterized protein LOC100631577 [KO:K05688] [EC:2.7.11.1]
100634397  mitochondrial import receptor subunit TOM40 homolog [KO:K11518]
100633533  mitochondrial import receptor subunit TOM40 homolog [KO:K11518]
100635751  mitochondrial import receptor subunit TOM40 homolog [KO:K11518]
105316899  mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
105312838  mitochondrial import receptor subunit TOM70-like [KO:K17768]
109582858  E3 ubiquitin-protein ligase parkin-like [KO:K04556] [EC:2.3.2.31]
100634532  E3 ubiquitin-protein ligase parkin-like [KO:K04556] [EC:2.3.2.31]
100638199  E3 ubiquitin-protein ligase MARCH5-like [KO:K10660] [EC:2.3.2.27]
100638327  E3 ubiquitin-protein ligase MARCH5-like [KO:K10660] [EC:2.3.2.27]
100642094  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
100632088  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
100639254  TNF receptor-associated factor 3-like [KO:K03173] [EC:2.3.2.27]
100636556  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
100634364  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
100637085  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
100636957  TNF receptor-associated factor 3-like isoform X1 [KO:K03173] [EC:2.3.2.27]
100639381  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
100637463  TNF receptor-associated factor 3-like [KO:K03173] [EC:2.3.2.27]
109582571  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
100632439  E3 ubiquitin-protein ligase SMURF1-like [KO:K04678] [EC:2.3.2.26]
100637500  E3 ubiquitin-protein ligase AMFR-like [KO:K10636] [EC:2.3.2.36]
105312533  mitochondrial ubiquitin ligase activator of nfkb 1-A-like [KO:K15688] [EC:2.3.2.27]
100639566  E3 ubiquitin-protein ligase Siah1-like [KO:K04506] [EC:2.3.2.27]
100631977  E3 ubiquitin-protein ligase arih1-like [KO:K11968] [EC:2.3.2.31]
100639894  mitofusin-1-like [KO:K06030] [EC:3.6.5.-]
100633865  mitofusin-2-like [KO:K06030] [EC:3.6.5.-]
100638053  mitochondrial Rho GTPase 1-A-like [KO:K07870] [EC:3.6.5.-]
105312478  ubiquitin [KO:K02927]
100641924  ubiquitin-40S ribosomal protein S27a [KO:K02977]
100636532  polyubiquitin-B [KO:K04551]
100636368  polyubiquitin-C-like [KO:K08770]
100635284  calcium-binding and coiled-coil domain-containing protein 2-like [KO:K21347]
100639005  tax1-binding protein 1 homolog B-like [KO:K21347]
100637508  uncharacterized protein LOC100637508 [KO:K14381]
100640463  next to BRCA1 gene 1 protein-like [KO:K17987]
100636688  serine/threonine-protein kinase TBK1-like [KO:K05410] [EC:2.7.11.10]
100641161  gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
100641288  gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
100640368  gamma-aminobutyric acid receptor-associated protein-like [KO:K08341]
100640362  microtubule-associated proteins 1A/1B light chain 3C-like [KO:K10435]
100632661  microtubule-associated proteins 1A/1B light chain 3A-like [KO:K10435]
100637755  beclin-1-like [KO:K08334]
100636574  ubiquitin carboxyl-terminal hydrolase 30-like isoform X2 [KO:K11851] [EC:3.4.19.12]
100637128  bcl-2-like protein 1 [KO:K04570]
100635779  bcl-2-like protein 1 [KO:K04570]
105316411  bcl-2-like protein 2 [KO:K04570]
105313732  bcl-2-like protein 1 [KO:K04570]
100641899  serine/threonine-protein phosphatase PGAM5, mitochondrial-like isoform X2 [KO:K15637] [EC:3.1.3.16]
100639610  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
100636488  casein kinase II subunit beta [KO:K03115]
100633964  FUN14 domain-containing protein 1-like [KO:K17986]
105312820  peptidyl-prolyl cis-trans isomerase FKBP8-like [KO:K09574] [EC:5.2.1.8]
100638504  sorting and assembly machinery component 50 homolog [KO:K07277]
100639272  prohibitin-2-like [KO:K17081]
105313362  metaxin-2-like [KO:K17776]
109580589  metaxin-1-like [KO:K17776]
100637960  eukaryotic translation initiation factor 2 subunit 1-like [KO:K03237]
100634724  activating transcription factor of chaperone-like [KO:K04374]
100636234  stress-activated protein kinase JNK-like [KO:K04440] [EC:2.7.11.24]
100640297  transcription factor AP-1-like [KO:K04448]
100637745  GTPase HRas [KO:K07827]
100636948  GTPase HRas-like [KO:K07830]
109586425  uncharacterized protein LOC109586425 [KO:K09408]
100638309  microphthalmia-associated transcription factor-like [KO:K09455]
105314011  vacuolar protein sorting-associated protein 9A-like [KO:K20131]
100635646  rab5 GDP/GTP exchange factor-like [KO:K20131]
100631562  protein SAND-like [KO:K20195]
100636332  vacuolar fusion protein CCZ1 homolog [KO:K27045]
100634257  ras-related protein rab7-like [KO:K07897]
105316462  ras-related protein RABF2a-like [KO:K07897]
100640308  TBC1 domain family member 15-like [KO:K20168]
100637705  TBC1 domain family member 15-like [KO:K20168]
100632247  TBC1 domain family member 15-like [KO:K20168]
100640505  TBC1 domain family member 15-like [KO:K20168]
105313545  mitochondrial fission 1 protein-like [KO:K17969]
100634849  autophagy-related protein 9A-like [KO:K17907]
100639329  dynamin-like 120 kDa protein, mitochondrial [KO:K17079] [EC:3.6.5.5]
100639432  transitional endoplasmic reticulum ATPase-like isoform X1 [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
aqu04140  Autophagy - animal
KO pathway
ko04137   
LinkDB

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