KEGG   PATHWAY: aram00020
Entry
aram00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aminithiophilus ramosus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aram00020  Citrate cycle (TCA cycle)
aram00020

Module
aram_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aram00020]
aram_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aram00020]
Other DBs
GO: 0006099
Organism
Aminithiophilus ramosus [GN:aram]
Gene
KAR29_12165  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KAR29_04080  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KAR29_12170  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
KAR29_04075  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
KAR29_04575  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KAR29_06570  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KAR29_07435  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KAR29_04570  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KAR29_06575  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KAR29_07430  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KAR29_06580  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
KAR29_07425  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
KAR29_06565  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
KAR29_07440  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
KAR29_02210  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
KAR29_02215  fumarate hydratase C-terminal domain-containing protein [KO:K01678] [EC:4.2.1.2]
KAR29_00400  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KAR29_10210  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
KAR29_04055  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aram00010  Glycolysis / Gluconeogenesis
aram00061  Fatty acid biosynthesis
aram00071  Fatty acid degradation
aram00190  Oxidative phosphorylation
aram00220  Arginine biosynthesis
aram00250  Alanine, aspartate and glutamate metabolism
aram00280  Valine, leucine and isoleucine degradation
aram00350  Tyrosine metabolism
aram00470  D-Amino acid metabolism
aram00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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