KEGG   PATHWAY: asaa00020
Entry
asaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas sanarellii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asaa00020  Citrate cycle (TCA cycle)
asaa00020

Module
asaa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asaa00020]
asaa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asaa00020]
asaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asaa00020]
asaa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asaa00020]
asaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asaa00020]
Other DBs
GO: 0006099
Organism
Aeromonas sanarellii [GN:asaa]
Gene
KXJ75_10170  citrate synthase [KO:K01647] [EC:2.3.3.1]
KXJ75_02685  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KXJ75_16605  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KXJ75_17905  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
KXJ75_10195  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KXJ75_10200  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KXJ75_02655  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KXJ75_10210  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KXJ75_10205  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KXJ75_10185  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KXJ75_10190  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KXJ75_10175  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
KXJ75_10180  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KXJ75_05940  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KXJ75_05935  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
KXJ75_05930  fumarate reductase subunit C [KO:K00246]
KXJ75_05925  frdD; fumarate reductase subunit FrdD [KO:K00247]
KXJ75_13005  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KXJ75_18940  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KXJ75_20945  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KXJ75_03115  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KXJ75_02645  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KXJ75_02650  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KXJ75_07965  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asaa00010  Glycolysis / Gluconeogenesis
asaa00053  Ascorbate and aldarate metabolism
asaa00061  Fatty acid biosynthesis
asaa00071  Fatty acid degradation
asaa00190  Oxidative phosphorylation
asaa00220  Arginine biosynthesis
asaa00250  Alanine, aspartate and glutamate metabolism
asaa00280  Valine, leucine and isoleucine degradation
asaa00350  Tyrosine metabolism
asaa00470  D-Amino acid metabolism
asaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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