KEGG   PATHWAY: ata00020
Entry
ata00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Agrobacterium tumefaciens S33
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ata00020  Citrate cycle (TCA cycle)
ata00020

Module
ata_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ata00020]
ata_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ata00020]
ata_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ata00020]
ata_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ata00020]
Other DBs
GO: 0006099
Organism
Agrobacterium tumefaciens S33 [GN:ata]
Gene
AWN88_12245  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWN88_18305  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AWN88_11060  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AWN88_14570  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWN88_18060  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AWN88_18055  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AWN88_18040  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWN88_12320  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWN88_18065  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AWN88_18070  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AWN88_21520  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AWN88_18095  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AWN88_18090  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AWN88_18105  succinate dehydrogenase [KO:K00241]
AWN88_18100  succinate dehydrogenase [KO:K00242]
AWN88_13100  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AWN88_18075  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWN88_23685  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AWN88_18500  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AWN88_19200  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AWN88_12300  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AWN88_12305  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AWN88_12310  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ata00010  Glycolysis / Gluconeogenesis
ata00053  Ascorbate and aldarate metabolism
ata00061  Fatty acid biosynthesis
ata00071  Fatty acid degradation
ata00190  Oxidative phosphorylation
ata00220  Arginine biosynthesis
ata00250  Alanine, aspartate and glutamate metabolism
ata00280  Valine, leucine and isoleucine degradation
ata00350  Tyrosine metabolism
ata00470  D-Amino acid metabolism
ata00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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