KEGG   PATHWAY: ath00564
Entry
ath00564                    Pathway                                
Name
Glycerophospholipid metabolism - Arabidopsis thaliana (thale cress)
Class
Metabolism; Lipid metabolism
Pathway map
ath00564  Glycerophospholipid metabolism
ath00564

Module
ath_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:ath00564]
Other DBs
GO: 0006650
Organism
Arabidopsis thaliana (thale cress) [GN:ath]
Gene
AT5G40610  GPDHp; NAD-dependent glycerol-3-phosphate dehydrogenase family protein [KO:K00006] [EC:1.1.1.8]
AT2G40690  GLY1; NAD-dependent glycerol-3-phosphate dehydrogenase family protein [KO:K00006] [EC:1.1.1.8]
AT2G41540  GPDHC1; 6-phosphogluconate dehydrogenase family protein [KO:K00006] [EC:1.1.1.8]
AT3G07690  6-phosphogluconate dehydrogenase family protein [KO:K00006] [EC:1.1.1.8]
AT3G10370  SDP6; FAD-dependent oxidoreductase family protein [KO:K00111] [EC:1.1.5.3]
AT5G60620  GPAT9; glycerol-3-phosphate acyltransferase 9 [KO:K13506] [EC:2.3.1.15]
AT1G32200  ATS1; phospholipid/glycerol acyltransferase family protein [KO:K00630] [EC:2.3.1.15]
AT1G06520  GPAT1; glycerol-3-phosphate acyltransferase 1 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
AT1G02390  GPAT2; glycerol-3-phosphate acyltransferase 2 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
AT4G01950  GPAT3; glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
AT1G01610  GPAT4; glycerol-3-phosphate acyltransferase 4 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
AT2G38110  GPAT6; glycerol-3-phosphate acyltransferase 6 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
AT5G06090  GPAT7; glycerol-3-phosphate acyltransferase 7 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
AT3G11430  GPAT5; glycerol-3-phosphate acyltransferase 5 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
AT4G00400  GPAT8; glycerol-3-phosphate acyltransferase 8 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
AT4G30580  ATS2; Phospholipid/glycerol acyltransferase family protein [KO:K00655] [EC:2.3.1.51]
AT1G51260  LPAT3; lysophosphatidyl acyltransferase 3 [KO:K13523] [EC:2.3.1.51 2.3.1.-]
AT3G57650  LPAT2; lysophosphatidyl acyltransferase 2 [KO:K13523] [EC:2.3.1.51 2.3.1.-]
AT1G75020  LPAT4; lysophosphatidyl acyltransferase 4 [KO:K13513] [EC:2.3.1.- 2.3.1.51]
AT3G18850  LPAT5; lysophosphatidyl acyltransferase 5 [KO:K13513] [EC:2.3.1.- 2.3.1.51]
AT1G12640  LPLAT1; MBOAT (membrane bound O-acyl transferase) family protein [KO:K13519] [EC:2.3.1.51 2.3.1.23 2.3.1.-]
AT1G63050  LPLAT2; MBOAT (membrane bound O-acyl transferase) family protein [KO:K13519] [EC:2.3.1.51 2.3.1.23 2.3.1.-]
AT3G57140  SDP1-LIKE; sugar-dependent 1-like protein [KO:K14674] [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]
AT5G04040  SDP1; Patatin-like phospholipase family protein [KO:K14674] [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]
AT4G24730  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
AT3G09560  PAH1; Lipin family protein [KO:K15728] [EC:3.1.3.4]
AT5G42870  PAH2; phosphatidic acid phosphohydrolase 2 [KO:K15728] [EC:3.1.3.4]
AT3G02600  LPP3; lipid phosphate phosphatase 3 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
AT1G15080  LPP2; lipid phosphate phosphatase 2 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
AT2G01180  PAP1; phosphatidic acid phosphatase 1 [KO:K18693] [EC:3.6.1.75 3.1.3.4]
AT3G18220  LPP4; Phosphatidic acid phosphatase (PAP2) family protein [KO:K18693] [EC:3.6.1.75 3.1.3.4]
AT5G63770  DGK2; diacylglycerol kinase 2 [KO:K00901] [EC:2.7.1.107]
AT5G07920  DGK1; diacylglycerol kinase1 [KO:K00901] [EC:2.7.1.107]
AT5G57690  DGK4; diacylglycerol kinase 4 [KO:K00901] [EC:2.7.1.107]
AT2G18730  DGK3; diacylglycerol kinase 3 [KO:K00901] [EC:2.7.1.107]
AT4G30340  DGK7; diacylglycerol kinase 7 [KO:K00901] [EC:2.7.1.107]
AT4G28130  DGK6; diacylglycerol kinase 6 [KO:K00901] [EC:2.7.1.107]
AT2G20900  DGK5; diacylglycerol kinase 5 [KO:K00901] [EC:2.7.1.107]
AT1G07230  NPC1; non-specific phospholipase C1 [KO:K01114] [EC:3.1.4.3]
AT2G26870  NPC2; non-specific phospholipase C2 [KO:K01114] [EC:3.1.4.3]
AT3G48610  NPC6; non-specific phospholipase C6 [KO:K01114] [EC:3.1.4.3]
AT3G03540  NPC5; non-specific phospholipase C5 [KO:K01114] [EC:3.1.4.3]
AT3G03530  NPC4; non-specific phospholipase C4 [KO:K01114] [EC:3.1.4.3]
AT2G42010  PLDBETA1; phospholipase D beta 1 [KO:K01115] [EC:3.1.4.4]
AT5G25370  PLDALPHA3; phospholipase D alpha 3 [KO:K01115] [EC:3.1.4.4]
AT4G11840  PLDGAMMA3; phospholipase D gamma 3 [KO:K01115] [EC:3.1.4.4]
AT4G11850  PLDGAMMA1; phospholipase D gamma 1 [KO:K01115] [EC:3.1.4.4]
AT1G55180  PLDEPSILON; phospholipase D alpha 4 [KO:K01115] [EC:3.1.4.4]
AT3G05630  PLDP2; phospholipase D P2 [KO:K01115] [EC:3.1.4.4]
AT3G15730  PLDALPHA1; phospholipase D alpha 1 [KO:K01115] [EC:3.1.4.4]
AT3G16785  PLDP1; phospholipase D P1 [KO:K01115] [EC:3.1.4.4]
AT1G52570  PLDALPHA2; phospholipase D alpha 2 [KO:K01115] [EC:3.1.4.4]
AT4G35790  PLDDELTA; phospholipase D delta [KO:K01115] [EC:3.1.4.4]
AT4G00240  PLDBETA2; phospholipase D beta 2 [KO:K01115] [EC:3.1.4.4]
AT4G11830  PLDGAMMA2; phospholipase D gamma 2 [KO:K01115] [EC:3.1.4.4]
AT2G06925  PLA2-ALPHA; Phospholipase A2 family protein [KO:K01047] [EC:3.1.1.4]
AT2G45670  calcineurin B subunit-like protein [KO:K13510] [EC:2.3.1.23 2.3.1.67]
AT1G80950  Phospholipid/glycerol acyltransferase family protein [KO:K13510] [EC:2.3.1.23 2.3.1.67]
AT2G44810  DAD1; alpha/beta-Hydrolases superfamily protein [KO:K16818] [EC:3.1.1.32]
AT3G03310  LCAT3; lecithin:cholesterol acyltransferase 3 [KO:K22389] [EC:3.1.1.32]
AT4G19860  alpha/beta-Hydrolases superfamily protein [KO:K22389] [EC:3.1.1.32]
AT5G20060  alpha/beta-Hydrolases superfamily protein [KO:K06130] [EC:3.1.1.5]
AT3G15650  alpha/beta-Hydrolases superfamily protein [KO:K06130] [EC:3.1.1.5]
AT5G41080  GDPD2; PLC-like phosphodiesterases superfamily protein [KO:K18696] [EC:3.1.4.46]
AT3G02040  SRG3; senescence-related gene 3 [KO:K18696] [EC:3.1.4.46]
AT5G43300  GDPD3; PLC-like phosphodiesterases superfamily protein [KO:K18696] [EC:3.1.4.46]
AT1G74210  GDPD5; PLC-like phosphodiesterases superfamily protein [KO:K01126] [EC:3.1.4.46]
AT5G08030  GDPD6; PLC-like phosphodiesterases superfamily protein [KO:K01126] [EC:3.1.4.46]
AT1G74320  Protein kinase superfamily protein [KO:K14156] [EC:2.7.1.32 2.7.1.82]
AT4G09760  Protein kinase superfamily protein [KO:K14156] [EC:2.7.1.32 2.7.1.82]
AT1G71697  CK1; choline kinase 1 [KO:K14156] [EC:2.7.1.32 2.7.1.82]
AT2G32260  CCT1; phosphorylcholine cytidylyltransferase [KO:K00968] [EC:2.7.7.15]
AT4G15130  CCT2; phosphorylcholine cytidylyltransferase2 [KO:K00968] [EC:2.7.7.15]
AT1G13560  AAPT1; aminoalcoholphosphotransferase 1 [KO:K00993] [EC:2.7.8.1]
AT3G25585  AAPT2; aminoalcoholphosphotransferase [KO:K00993] [EC:2.7.8.1]
AT1G43710  EMB1075; Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [KO:K25193] [EC:4.1.1.-]
AT2G26830  emb1187; Protein kinase superfamily protein [KO:K00894] [EC:2.7.1.82]
AT2G38670  PECT1; phosphorylethanolamine cytidylyltransferase 1 [KO:K00967] [EC:2.7.7.14]
AT3G18000  XPL1; S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [KO:K05929] [EC:2.1.1.103]
AT1G48600  PMEAMT; S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [KO:K05929] [EC:2.1.1.103]
AT1G73600  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [KO:K05929] [EC:2.1.1.103]
AT1G80860  PLMT; phospholipid N-methyltransferase [KO:K00550] [EC:2.1.1.71]
AT4G26770  Phosphatidate cytidylyltransferase family protein [KO:K00981] [EC:2.7.7.41]
AT1G62430  CDS1; CDP-diacylglycerol synthase 1 [KO:K00981] [EC:2.7.7.41]
AT4G22340  CDS2; cytidinediphosphate diacylglycerol synthase 2 [KO:K00981] [EC:2.7.7.41]
AT2G45150  CDS4; cytidinediphosphate diacylglycerol synthase 4 [KO:K00981] [EC:2.7.7.41]
AT3G60620  CDS5; cytidinediphosphate diacylglycerol synthase 5 [KO:K00981] [EC:2.7.7.41]
AT1G15110  PSS1; phosphatidyl serine synthase family protein [KO:K08730] [EC:2.7.8.29]
AT4G16700  PSD1; phosphatidylserine decarboxylase 1 [KO:K01613] [EC:4.1.1.65]
AT4G25970  PSD3; phosphatidylserine decarboxylase 3 [KO:K01613] [EC:4.1.1.65]
AT5G57190  PSD2; phosphatidylserine decarboxylase 2 [KO:K01613] [EC:4.1.1.65]
AT2G39290  PGP1; phosphatidylglycerolphosphate synthase 1 [KO:K00995] [EC:2.7.8.5]
AT3G55030  PGPS2; phosphatidylglycerolphosphate synthase 2 [KO:K00995] [EC:2.7.8.5]
AT3G58830  haloacid dehalogenase (HAD) superfamily protein [KO:K01094] [EC:3.1.3.27]
AT4G04870  CLS; cardiolipin synthase [KO:K08744] [EC:2.7.8.41]
AT1G78690  At1g78690p; Phospholipid/glycerol acyltransferase family protein [KO:K13511] [EC:2.3.1.-]
AT3G05510  Phospholipid/glycerol acyltransferase family protein [KO:K13511] [EC:2.3.1.-]
AT4G38570  PIS2; Putative CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2 [KO:K00999] [EC:2.7.8.11]
AT1G68000  PIS1; phosphatidylinositol synthase 1 [KO:K00999] [EC:2.7.8.11]
Compound
C00040  Acyl-CoA
C00065  L-Serine
C00084  Acetaldehyde
C00093  sn-Glycerol 3-phosphate
C00111  Glycerone phosphate
C00114  Choline
C00157  Phosphatidylcholine
C00189  Ethanolamine
C00269  CDP-diacylglycerol
C00307  CDP-choline
C00344  Phosphatidylglycerol
C00346  Ethanolamine phosphate
C00350  Phosphatidylethanolamine
C00416  Phosphatidate
C00513  CDP-glycerol
C00570  CDP-ethanolamine
C00588  Choline phosphate
C00623  sn-Glycerol 1-phosphate
C00641  1,2-Diacyl-sn-glycerol
C00670  sn-Glycero-3-phosphocholine
C00681  1-Acyl-sn-glycerol 3-phosphate
C01194  1-Phosphatidyl-D-myo-inositol
C01210  N-Methylethanolamine phosphate
C01233  sn-Glycero-3-phosphoethanolamine
C01241  Phosphatidyl-N-methylethanolamine
C01996  Acetylcholine
C02737  Phosphatidylserine
C03372  Acylglycerone phosphate
C03819  1-Acylglycerophosphoinositol
C03872  L-Serine-phosphoethanolamine
C03892  Phosphatidylglycerophosphate
C03974  2-Acyl-sn-glycerol 3-phosphate
C04230  1-Acyl-sn-glycero-3-phosphocholine
C04233  2-Acyl-sn-glycero-3-phosphocholine
C04308  Phosphatidyl-N-dimethylethanolamine
C04438  1-Acyl-sn-glycero-3-phosphoethanolamine
C04590  3-(O-Geranylgeranyl)-sn-glycerol 1-phosphate
C04638  2,3-Bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate
C05973  2-Acyl-sn-glycero-3-phosphoethanolamine
C05974  2-Acyl-sn-glycero-3-phosphoserine
C05976  Aminoacyl-phosphatidylglycerol
C05980  Cardiolipin
C06771  Triethanolamine
C06772  Diethanolamine
C13482  Phosphodimethylethanolamine
C18059  CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol
C18125  1-Acyl-sn-glycero-3-phosphoserine
C18126  1-Acyl-sn-glycero-3-phosphoglycerol
C18129  Monolysocardiolipin
C18168  Diacylglycerylhomoserine
C18169  Diacylglyceryl-N,N,N-trimethylhomoserine
C20466  2,3-Bis-(O-geranylgeranyl)-sn-glycero-1-phospho-L-serine
C20518  2,3-Bis-(O-phytanyl)-sn-glycerol 1-phosphate
C22340  Heptaprenylglyceryl phosphate
C22341  Heptaprenylglycerol
C22342  Diacetylheptaprenylglycerol
Reference
PMID:1512203
  Authors
Racenis PV, Lai JL, Das AK, Mullick PC, Hajra AK, Greenberg ML.
  Title
The acyl dihydroxyacetone phosphate pathway enzymes for glycerolipid biosynthesis are present in the yeast Saccharomyces cerevisiae.
  Journal
J Bacteriol 174:5702-10 (1992)
DOI:10.1128/JB.174.17.5702-5710.1992
Reference
PMID:10092508
  Authors
Taniyama Y, Shibata S, Kita S, Horikoshi K, Fuse H, Shirafuji H, Sumino Y, Fujino M.
  Title
Cloning and expression of a novel lysophospholipase which structurally resembles lecithin cholesterol acyltransferase.
  Journal
Biochem Biophys Res Commun 257:50-6 (1999)
DOI:10.1006/bbrc.1999.0411
Reference
PMID:10542045
  Authors
Athenstaedt K, Daum G.
  Title
Phosphatidic acid, a key intermediate in lipid metabolism.
  Journal
Eur J Biochem 266:1-16 (1999)
DOI:10.1046/j.1432-1327.1999.00822.x
Reference
PMID:12431977
  Authors
Shields DJ, Lehner R, Agellon LB, Vance DE.
  Title
Membrane topography of human phosphatidylethanolamine N-methyltransferase.
  Journal
J Biol Chem 278:2956-62 (2003)
DOI:10.1074/jbc.M210904200
Reference
PMID:14663079
  Authors
Martinez-Morales F, Schobert M, Lopez-Lara IM, Geiger O.
  Title
Pathways for phosphatidylcholine biosynthesis in bacteria.
  Journal
Microbiology 149:3461-71 (2003)
DOI:10.1099/mic.0.26522-0
Reference
PMID:15522832
  Authors
Burgermeister M, Birner-Grunberger R, Nebauer R, Daum G.
  Title
Contribution of different pathways to the supply of phosphatidylethanolamine and phosphatidylcholine to mitochondrial membranes of the yeast Saccharomyces cerevisiae.
  Journal
Biochim Biophys Acta 1686:161-8 (2004)
DOI:10.1016/j.bbalip.2004.09.007
Reference
PMID:1649829
  Authors
Hsu L, Jackowski S, Rock CO
  Title
Isolation and characterization of Escherichia coli K-12 mutants lacking both 2-acyl-glycerophosphoethanolamine acyltransferase and acyl-acyl carrier protein synthetase activity.
  Journal
J Biol Chem 266:13783-8 (1991)
Reference
PMID:10938271
  Authors
Stone SJ, Vance JE.
  Title
Phosphatidylserine synthase-1 and -2 are localized to mitochondria-associated membranes.
  Journal
J Biol Chem 275:34534-40 (2000)
DOI:10.1074/jbc.M002865200
Related
pathway
ath00010  Glycolysis / Gluconeogenesis
ath00260  Glycine, serine and threonine metabolism
ath00561  Glycerolipid metabolism
ath00562  Inositol phosphate metabolism
ath00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ath00565  Ether lipid metabolism
ath00620  Pyruvate metabolism
KO pathway
ko00564   
LinkDB

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