KEGG   PATHWAY: bai00020
Entry
bai00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus anthracis A0248
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bai00020  Citrate cycle (TCA cycle)
bai00020

Module
bai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bai00020]
bai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bai00020]
bai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bai00020]
bai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bai00020]
bai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bai00020]
Other DBs
GO: 0006099
Organism
Bacillus anthracis A0248 [GN:bai]
Gene
BAA_4850  citZ; citrate synthase CitZ [KO:K01647] [EC:2.3.3.1]
BAA_2406  mmgD; citrate (Si)-synthase MmgD [KO:K01647] [EC:2.3.3.1]
BAA_3705  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BAA_4849  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BAA_1344  odhA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BAA_1343  odhB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BAA_2836  acoL; acetoin dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
BAA_4204  pdhD; pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAA_4404  bfmbC; 3-methyl-2-oxobutanoate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
BAA_3935  putative pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BAA_3934  putative pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BAA_3996  sucD; succinate-CoA ligase (ADP-forming), alpha subunit [KO:K01902] [EC:6.2.1.5]
BAA_3997  sucC; succinate-CoA ligase (ADP-forming), beta subunit [KO:K01903] [EC:6.2.1.5]
BAA_1931  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BAA_4769  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BAA_4768  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BAA_4770  sdhC; succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BAA_0488  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BAA_1840  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BAA_4848  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BAA_3026  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
BAA_4182  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BAA_5034  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BAA_4207  pdhA; pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BAA_4206  pdhB; pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BAA_2837  acoC; acetoin dehydrogenase, E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BAA_4205  pdhC; pyruvate dehydrogenase complex E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bai00010  Glycolysis / Gluconeogenesis
bai00053  Ascorbate and aldarate metabolism
bai00061  Fatty acid biosynthesis
bai00071  Fatty acid degradation
bai00190  Oxidative phosphorylation
bai00220  Arginine biosynthesis
bai00250  Alanine, aspartate and glutamate metabolism
bai00280  Valine, leucine and isoleucine degradation
bai00350  Tyrosine metabolism
bai00470  D-Amino acid metabolism
bai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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