KEGG   PATHWAY: balu00020
Entry
balu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus albus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
balu00020  Citrate cycle (TCA cycle)
balu00020

Module
balu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:balu00020]
balu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:balu00020]
balu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:balu00020]
balu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:balu00020]
balu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:balu00020]
Other DBs
GO: 0006099
Organism
Bacillus albus [GN:balu]
Gene
QRY64_25880  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
QRY64_13990  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
QRY64_20700  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QRY64_25875  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QRY64_08765  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QRY64_08760  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QRY64_22735  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QRY64_23735  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QRY64_15700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QRY64_21510  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QRY64_21505  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QRY64_22060  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QRY64_22065  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QRY64_11415  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
QRY64_25470  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QRY64_25465  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QRY64_25475  sdhC; succinate dehydrogenase cytochrome B558 [KO:K00241]
QRY64_04725  fumA; class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QRY64_11015  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QRY64_25870  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QRY64_16925  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
QRY64_22620  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
QRY64_26795  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QRY64_22750  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QRY64_22745  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
QRY64_22740  pdhC; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
QRY64_15695  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
balu00010  Glycolysis / Gluconeogenesis
balu00053  Ascorbate and aldarate metabolism
balu00061  Fatty acid biosynthesis
balu00071  Fatty acid degradation
balu00190  Oxidative phosphorylation
balu00220  Arginine biosynthesis
balu00250  Alanine, aspartate and glutamate metabolism
balu00280  Valine, leucine and isoleucine degradation
balu00350  Tyrosine metabolism
balu00470  D-Amino acid metabolism
balu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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