KEGG   PATHWAY: bat00020
Entry
bat00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus anthracis Sterne
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bat00020  Citrate cycle (TCA cycle)
bat00020

Module
bat_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bat00020]
bat_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bat00020]
bat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bat00020]
bat_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bat00020]
bat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bat00020]
Other DBs
GO: 0006099
Organism
Bacillus anthracis Sterne [GN:bat]
Gene
BAS2188  citrate synthase MmgD [KO:K01647] [EC:2.3.3.1]
BAS4488  citrate synthase CitZ [KO:K01647] [EC:2.3.3.1]
BAS3408  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BAS4487  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BAS1177  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BAS1176  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BAS2585  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAS4068  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAS3880  pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAS3623  pyruvate ferredoxin oxidoreductase, alpha subunit, putative [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BAS3622  pyruvate ferredoxin oxidoreductase, beta subunit, putative [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BAS3686  succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BAS3687  succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
BAS1726  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BAS4413  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BAS4412  succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BAS4414  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BAS0410  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BAS1637  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BAS4486  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BAS2762  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
BAS3859  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BAS4661  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BAS3883  pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BAS3882  pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BAS2586  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BAS3881  pyruvate dehydrogenase complex E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bat00010  Glycolysis / Gluconeogenesis
bat00053  Ascorbate and aldarate metabolism
bat00061  Fatty acid biosynthesis
bat00071  Fatty acid degradation
bat00190  Oxidative phosphorylation
bat00220  Arginine biosynthesis
bat00250  Alanine, aspartate and glutamate metabolism
bat00280  Valine, leucine and isoleucine degradation
bat00350  Tyrosine metabolism
bat00470  D-Amino acid metabolism
bat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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