KEGG   PATHWAY: bcy00020
Entry
bcy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus cytotoxicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcy00020  Citrate cycle (TCA cycle)
bcy00020

Module
bcy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcy00020]
bcy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcy00020]
bcy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcy00020]
bcy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcy00020]
bcy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcy00020]
Other DBs
GO: 0006099
Organism
Bacillus cytotoxicus [GN:bcy]
Gene
Bcer98_1724  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Bcer98_3278  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Bcer98_2264  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Bcer98_3277  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Bcer98_0961  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Bcer98_0960  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Bcer98_2857  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bcer98_2671  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bcer98_2426  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bcer98_2425  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bcer98_2487  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Bcer98_2488  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Bcer98_3216  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bcer98_3215  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bcer98_3217  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Bcer98_0409  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Bcer98_1415  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Bcer98_3276  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Bcer98_2135  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Bcer98_2649  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Bcer98_3438  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Bcer98_2674  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
Bcer98_2673  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Bcer98_2672  Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcy00010  Glycolysis / Gluconeogenesis
bcy00053  Ascorbate and aldarate metabolism
bcy00061  Fatty acid biosynthesis
bcy00071  Fatty acid degradation
bcy00190  Oxidative phosphorylation
bcy00220  Arginine biosynthesis
bcy00250  Alanine, aspartate and glutamate metabolism
bcy00280  Valine, leucine and isoleucine degradation
bcy00350  Tyrosine metabolism
bcy00470  D-Amino acid metabolism
bcy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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