KEGG   PATHWAY: beba00920
Entry
beba00920                   Pathway                                
Name
Sulfur metabolism - Betaproteobacteria bacterium GR16-43
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
beba00920  Sulfur metabolism
beba00920

Module
beba_M00021  Cysteine biosynthesis, serine => cysteine [PATH:beba00920]
beba_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:beba00920]
beba_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:beba00920]
Other DBs
GO: 0006790
Organism
Betaproteobacteria bacterium GR16-43 [GN:beba]
Gene
BWI17_13290  sulfate transporter subunit [KO:K23163]
BWI17_13285  sulfate ABC transporter permease subunit CysT [KO:K02046]
BWI17_13280  sulfate ABC transporter permease subunit CysW [KO:K02047]
BWI17_13275  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
BWI17_05625  ABC transporter substrate-binding protein [KO:K15553]
BWI17_05635  ABC transporter permease [KO:K15554]
BWI17_05630  mannosyltransferase [KO:K15555] [EC:7.6.2.14]
BWI17_14745  adenylyl-sulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
BWI17_13300  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
BWI17_14750  sulfate adenylyltransferase small subunit [KO:K00957] [EC:2.7.7.4]
BWI17_13305  sulfate adenylyltransferase small subunit [KO:K00957] [EC:2.7.7.4]
BWI17_13310  phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
BWI17_10330  sulfur oxidation c-type cytochrome SoxA [KO:K17222] [EC:2.8.5.2]
BWI17_19710  sulfur oxidation c-type cytochrome SoxA [KO:K17222] [EC:2.8.5.2]
BWI17_11375  sulfur oxidation c-type cytochrome SoxX [KO:K17222] [EC:2.8.5.2]
BWI17_16385  sulfur oxidation c-type cytochrome SoxA [KO:K17222] [EC:2.8.5.2]
BWI17_10315  sulfur oxidation c-type cytochrome SoxX [KO:K17223] [EC:2.8.5.2]
BWI17_19705  hypothetical protein [KO:K17223] [EC:2.8.5.2]
BWI17_16380  sulfur oxidation c-type cytochrome SoxX [KO:K17223] [EC:2.8.5.2]
BWI17_10320  hypothetical protein [KO:K17226]
BWI17_11380  hypothetical protein [KO:K17226]
BWI17_16400  thiosulfate oxidation carrier protein SoxY [KO:K17226]
BWI17_10325  thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
BWI17_11385  thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
BWI17_16395  thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
BWI17_16375  thiosulfohydrolase SoxB [KO:K17224] [EC:3.1.6.20]
BWI17_16410  sulfite dehydrogenase [KO:K17225]
BWI17_16405  cytochrome C [KO:K22622] [EC:1.8.2.6]
BWI17_00030  hypothetical protein [KO:K00380] [EC:1.8.1.2]
BWI17_13320  sulfite reductase [KO:K00381] [EC:1.8.1.2]
BWI17_20275  flavocytochrome C [KO:K17229] [EC:1.8.2.3]
BWI17_20280  hypothetical protein [KO:K17230]
BWI17_01770  hypothetical protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BWI17_06885  hypothetical protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BWI17_07670  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BWI17_20595  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
BWI17_07030  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
BWI17_18200  hypothetical protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
BWI17_19065  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
BWI17_06710  selenium-binding protein [KO:K17285] [EC:1.8.3.4]
BWI17_03210  long-chain fatty acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
BWI17_11140  AMP-dependent synthetase [KO:K20034] [EC:6.2.1.44]
BWI17_17455  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
BWI17_17330  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
BWI17_21020  enoyl-CoA hydratase [KO:K20036] [EC:4.2.1.155]
BWI17_20985  hypothetical protein [KO:K21310] [EC:2.1.1.334]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
beba00260  Glycine, serine and threonine metabolism
beba00270  Cysteine and methionine metabolism
beba00680  Methane metabolism
beba00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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