KEGG   PATHWAY: bli00630
Entry
bli00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bacillus licheniformis ATCC 14580
Class
Metabolism; Carbohydrate metabolism
Pathway map
bli00630  Glyoxylate and dicarboxylate metabolism
bli00630

Module
bli_M00012  Glyoxylate cycle [PATH:bli00630]
bli_M00621  Glycine cleavage system [PATH:bli00630]
Other DBs
GO: 0046487 0043648
Organism
Bacillus licheniformis ATCC 14580 [GN:bli]
Gene
BL02646  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BL00550  ytcI; AMP-dependent synthetase and ligase YtcI [KO:K01895] [EC:6.2.1.1]
BL00440  acsA; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BL01993  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BL02644  Malate synthase A [KO:K01638] [EC:2.3.3.9]
BL00397  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BL02891  citA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BL00399  citZ; citrate synthase II [KO:K01647] [EC:2.3.3.1]
BL00561  mmgD; citrate synthase III [KO:K01647] [EC:2.3.3.1]
BL02940  citB; aconitate hydratase (aconitase) [KO:K01681] [EC:4.2.1.3]
BL03925  mmgA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BL01386  yqjD; Carboxyl transferase YqjD [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BL01799  ysfC; Glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
BL01798  ysfD; 4Fe-4S ferredoxin, iron-sulfur binding domain [KO:K11473] [EC:1.1.99.14]
BL00939  katX; major catalase in spores [KO:K03781] [EC:1.11.1.6]
BL00951  katA; vegetative catalase 1 [KO:K03781] [EC:1.11.1.6]
BL02138  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain,D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [KO:K00015] [EC:1.1.1.26]
BL03603  yvcT; probable 2-ketogluconate reductase YvcT [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BL03233  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BL03991  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BL01561  gcvPA; glycine decarboxylase (subunit 1) (glycine cleavage system protein P) [KO:K00282] [EC:1.4.4.2]
BL01560  gcvPB; glycine decarboxylase (subunit 2) (glycine cleavage system protein P) [KO:K00283] [EC:1.4.4.2]
BL01562  gcvT; aminomethyltransferase (glycine cleavage system protein T) [KO:K00605] [EC:2.1.2.10]
BL03015  acoL; acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BL01619  pdhD; dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
BL01503  bfmBC; branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BL02176  gcvH; glycine cleavage system protein H [KO:K02437]
BL02363  glxK; Glycerate kinase GlxK [KO:K00865] [EC:2.7.1.165]
BL03389  ycsA; Isocitrate/isopropylmalate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BL02470  kdgA; 2-keto-3-deoxygluconate-6-phosphate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BL03850  2-keto-3-deoxygluconate-6-phosphate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BL00821  oxdC; oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
BL02109  yrhE; Formate dehydrogenase, alpha subunit YrhE [KO:K00123] [EC:1.17.1.9]
BL05207  yjgC; iron-sulfur binding domain containing protein [KO:K00123] [EC:1.17.1.9]
BL03753  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bli00010  Glycolysis / Gluconeogenesis
bli00020  Citrate cycle (TCA cycle)
bli00030  Pentose phosphate pathway
bli00053  Ascorbate and aldarate metabolism
bli00071  Fatty acid degradation
bli00230  Purine metabolism
bli00250  Alanine, aspartate and glutamate metabolism
bli00260  Glycine, serine and threonine metabolism
bli00620  Pyruvate metabolism
bli00710  Carbon fixation by Calvin cycle
bli00750  Vitamin B6 metabolism
bli00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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