KEGG   PATHWAY: bor03018
Entry
bor03018                    Pathway                                
Name
RNA degradation - Bipolaris oryzae
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bor03018  RNA degradation
bor03018

Other DBs
GO: 0006401
Organism
Bipolaris oryzae [GN:bor]
Gene
COCMIDRAFT_31931  hypothetical protein [KO:K12584] [EC:3.6.1.59]
COCMIDRAFT_32704  hypothetical protein [KO:K07573]
COCMIDRAFT_26451  hypothetical protein [KO:K03679]
COCMIDRAFT_34663  hypothetical protein [KO:K03681]
COCMIDRAFT_919  hypothetical protein [KO:K12586]
COCMIDRAFT_613  hypothetical protein [KO:K12587]
COCMIDRAFT_22243  hypothetical protein [KO:K12589]
COCMIDRAFT_7698  hypothetical protein [KO:K11600]
COCMIDRAFT_1368  hypothetical protein [KO:K12590]
COCMIDRAFT_108091  hypothetical protein [KO:K03678]
COCMIDRAFT_8422  hypothetical protein [KO:K12585] [EC:3.1.13.-]
COCMIDRAFT_50233  hypothetical protein [KO:K12592]
COCMIDRAFT_25999  hypothetical protein [KO:K03514] [EC:2.7.7.19]
COCMIDRAFT_84282  hypothetical protein [KO:K03514] [EC:2.7.7.19]
COCMIDRAFT_105310  hypothetical protein [KO:K12598] [EC:5.6.2.6]
COCMIDRAFT_102637  hypothetical protein [KO:K12599] [EC:5.6.2.6]
COCMIDRAFT_8676  hypothetical protein [KO:K12600]
COCMIDRAFT_26826  hypothetical protein [KO:K12601]
COCMIDRAFT_22714  hypothetical protein [KO:K12603] [EC:3.1.13.4]
COCMIDRAFT_85171  hypothetical protein [KO:K12604]
COCMIDRAFT_98550  hypothetical protein [KO:K12605]
COCMIDRAFT_100336  hypothetical protein [KO:K12580]
COCMIDRAFT_105223  hypothetical protein [KO:K10643] [EC:2.3.2.27]
COCMIDRAFT_89922  hypothetical protein [KO:K12606]
COCMIDRAFT_31597  hypothetical protein [KO:K12608]
COCMIDRAFT_498  hypothetical protein [KO:K12609]
COCMIDRAFT_110979  hypothetical protein [KO:K13126]
COCMIDRAFT_107319  hypothetical protein [KO:K12572]
COCMIDRAFT_24769  hypothetical protein [KO:K12613] [EC:3.6.1.62]
COCMIDRAFT_93013  hypothetical protein [KO:K12614] [EC:5.6.2.7]
COCMIDRAFT_569  hypothetical protein [KO:K12617]
COCMIDRAFT_87157  hypothetical protein [KO:K12620]
COCMIDRAFT_104637  hypothetical protein [KO:K12621]
COCMIDRAFT_86287  hypothetical protein [KO:K12622]
COCMIDRAFT_39744  hypothetical protein [KO:K12623]
COCMIDRAFT_37503  hypothetical protein [KO:K12624]
COCMIDRAFT_5104  hypothetical protein [KO:K12625]
COCMIDRAFT_6274  hypothetical protein [KO:K12626]
COCMIDRAFT_105408  hypothetical protein [KO:K12627]
COCMIDRAFT_104101  hypothetical protein [KO:K01689] [EC:4.2.1.11]
COCMIDRAFT_32384  hypothetical protein [KO:K00850] [EC:2.7.1.11]
COCMIDRAFT_23648  hypothetical protein [KO:K04043]
COCMIDRAFT_103094  hypothetical protein [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
bor03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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