KEGG   PATHWAY: bpeu03030
Entry
bpeu03030                   Pathway                                
Name
DNA replication - Bordetella pertussis 137
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
bpeu03030  DNA replication
bpeu03030

Organism
Bordetella pertussis 137 [GN:bpeu]
Gene
Q425_15780  exonuclease [KO:K02342] [EC:2.7.7.7]
Q425_34060  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
Q425_22960  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
Q425_14170  dnaX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Q425_17060  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
Q425_30070  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
Q425_22080  hypothetical protein [KO:K02339] [EC:2.7.7.7]
Q425_3320  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
Q425_25870  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Q425_28640  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
Q425_37870  ssb; single-strand binding protein [KO:K03111]
Q425_31900  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
Q425_12990  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
Q425_27270  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Q425_5430  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system